barSeed - Barley Seed Development Database

Probe CUST_29926_PI390587928

Source Contig U35_20366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29926_PI390587928	Hv_44K_v2	GCATATGCTTAAATGCTTTGGCTGTCTAGAAAGGTGGTATGCTTTCCTTTGAGGACATCT	826	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_27993.2	2818	2e-24	2689 - 2748	100	60 / 60	plus	ABC13179 ABC37714
JLOC1	JLOC1_18831.2	2882	8e-25	2689 - 2748	100	60 / 60	plus
JLOC1	JLOC1_18831.1	2609	8e-25	2416 - 2475	100	60 / 60	plus
Harvest21	ABC13179	974	3e-25	89 - 148	100	60 / 60	minus	ABC13179
Harvest21	ABC37714	344	2e-21	90 - 148	97	57 / 59	minus	ABC37714
Harvest35	U35_20366	974	3e-25	827 - 886	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_20366 974 Hv_44K_v2
GGATTTTTGATCCAAGTTGGAATCCTGCACAAGACTTGCAAGCACAGGACAGATCGTTCC
GATATGGACAGAAACGTCATGTCACAGTATTTCGCCTACTTGGAGCTGGTTCCCTAGAAG
AACTCATTTATTCTCGACAAATATATAAACAACAGCTTTCCAACATTGCAGTCTCAGGGA
AAATAGAAAAGCGATACTTTGACGGTGTGCAGGATGACAAGAAATTTCAGGGTGAGCTCT
TTGGGATCTGCAATCTGTTCCGTGACTTGTCCGATAAGCTTTTTACTAGTGAGATTATTG
AGATGCACGGAGAAGATGAGAAAGCTAAAACATCTGAAGCAACAGGGATAAGAGAAATAG
TTGACACTGATTTATTTGGTACACAAGGGCAAATGAAATCATCCACGGCAGCAATAGGTG
ATGAAAATCAGGCATTGGCTGATTATGGAGTTGTGTATGCTCACCGGAACGAGGATGTCG
TAAACACGAGGACACGCGACGACAACAACAACGAAAGAAACGACGGCACGACAGAAGAAT
GCGTCGAGGGCATCTCAGAGCGCCTGCATAGTAAGAAGCAAATAAAGCCTGCGGCAGACA
GGGCGAAATTTCGCTCAGTGGAGGAGCAGAAACGGAAGGAGTTCAGCCGTATCGCGTCCT
GTGTGGGCATGAACGACCTCGAGTTCAGCAAGTGGCTGCTGTCGGTGTCTCCTCTGCAGC
GGCAGCGGGTGCTGGAGGATCACAGGAAGAAAAGAAGTAGTATCACCGAACGTAAATGAC
GCAGGGTTTCTTCAGAGTTCTTTTTCCTTCATAGTGTGGAGCTATCGCATATGCTTAAAT
GCTTTGGCTGTCTAGAAAGGTGGTATGCTTTCCTTTGAGGACATCTCCATGTTTGTTTGT
TTGTTTGTTTGAAAAGTGATGGAAATCGATTAACATCAGGCGAGATTAAGTTTGGCTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_20366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g15890.3	424	4e-109	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g14910.1	852	1e-115
Arabidopsis v10	AT1G03750.1	862	2e-67	\| Symbols: CHR9 \| switch 2 \| chr1:937920-941068 FORWARD LENGTH=862