barSeed - Barley Seed Development Database

Probe CUST_29925_PI390587928

Source Contig U35_20367

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29925_PI390587928	Hv_44K_v2	CACTGTCTTTCATGTAGTTGTGGTTCTTCCTGATCTGATGCTCCAAGTTTATGCAAAAAA	549	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.178	2.715	1.111	0.632	0.215	0.178
Raw	1709.473	1188.112	423.160	356.276	47.570	41.565

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC12612	616	3e-25	546 - 605	100	60 / 60	plus	ABC12612
Harvest35	U35_20367	620	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (620 bp)

>U35_20367 620 Hv_44K_v2
TAGCGCTCTCTCCGTCCTCCCGTCCTCTCCTAGGGTTCGACGCCTTCGCCAGCTCGCGGC
CAGTAGCAATGGCGACAAAGTGCATCATCGGCGCGCTGATCGGATCCTTGGGCGTTGCGT
ACGTCTCCGACACGATCGTTTCTGACAAGAAGATCTTTGGAGGGACTGTTTGCAAGACCG
CGACCGACAAGGAGTGGTTTCAGGCCACGGACGCCAAGTTCCAGGCCTGGCCTCGCACCG
CTGGGCCGCCGGTCATCATGAACCCCATCAGCCGCCAGAACTTCATCGTCAAGAACCCCT
GAATAGGTGGCACAAGCGGCATCTTGCTCCCACCATGGGAGCCCAAGTTTAGTTTCTTTT
TTGGGTTTTGAAGTTCCTAATAAAAGGGACTTGAAAGTCAGGGTCTACTCTTTTGTTTTA
CAAATTTCAGTTTCCGTGAGCAACTTTGAGGTGCTTTACAGCTCGCTCGCTCGGATCGTC
TTTCGATGAACTCCGTTCCTCGATGAAGTCTATCCAAGAGCCAGTAAAATAACTGCATTG
TTGTTTCCGCACTGTCTTTCATGTAGTTGTGGTTCTTCCTGATCTGATGCTCCAAGTTTA
TGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20367 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None