barSeed - Barley Seed Development Database

Probe CUST_29921_PI390587928

Source Contig U35_32341

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29921_PI390587928	Hv_44K_v2	ACAGAATAAAGCCTCAGAAAACGACACTGAGGGCTCATCTCATGATGATGCCAAGATGGA	363	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.183	0.977	1.247	1.054	0.594	0.791
Raw	197.290	233.875	279.575	335.251	73.374	108.639

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249937.1	3046	2e-24	291 - 350	100	60 / 60	plus	ABC05877
MLOC	MLOC_36702.3	2819	2e-24	2348 - 2407	100	60 / 60	minus	ABC05877
MLOC	MLOC_36702.2	3221	2e-24	2812 - 2871	100	60 / 60	minus	ABC05877 ABC06742
MLOC	MLOC_36702.4	1730	2e-24	1305 - 1364	100	60 / 60	minus	ABC05877
MLOC	MLOC_36702.1	3315	2e-24	2890 - 2949	100	60 / 60	minus	ABC05877 ABC06742
JLOC1	JLOC1_23673.3	3306	8e-25	363 - 422	100	60 / 60	plus
JLOC1	JLOC1_23673.2	3442	8e-25	264 - 323	100	60 / 60	plus
JLOC1	JLOC1_23673.1	3222	8e-25	279 - 338	100	60 / 60	plus
Harvest35	U35_32341	479	3e-25	364 - 423	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_32341 479 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGAACATTTCTCCTCTCTCTCTCGAGTTGGAGGAAACCAGG
AGGCGACGGGGGGGACGCGACGCGACGCGACGCGACTCCACACTCTTCCGCGCGAATCAC
CGCTCTCCTCCAGCTTCTTACGTATTTGACTTTACGCACTTGGCCGAACTATTTTTCCGC
AGCTGGAGCAATAAGGGTCACCCGGATGACCGGGGCAGACCTGGCACCAGTAATGGAGTT
GATGGCTGTGGCAAATGGAGGAACATCCACTGACGTTGTTGCTTCTGATAAGAAGGATAA
TACCAAGATGGAAGAGGCTGGCAAGAGCAAGGATGTTGCAGTAGCGAATACCAATGCCAA
CCAACAGAATAAAGCCTCAGAAAACGACACTGAGGGCTCATCTCATGATGATGCCAAGAT
GGAGGAGGCTCAAGATGCAAAGGAAGATGATGTGGGTGCTGTAAAGTAGGCGGGTTTAG

Homology of Contig U35_32341 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None