barSeed - Barley Seed Development Database

Probe CUST_29919_PI390587928

Source Contig U35_32343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29919_PI390587928	Hv_44K_v2	TTGAGAAGCTCGCCGAGGGAGAAACTGATTCGAAAGGAAAGCCCACTGAGGCAATCCGAG	359	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364738	4540	2e-24	337 - 396	100	60 / 60	plus	ABC15231
Harvest35	U35_32343	435	3e-25	360 - 419	100	60 / 60	plus

Contig Sequence (435 bp)

>U35_32343 435 Hv_44K_v2
GCTAGTCGCAACTCAGATCTCCCCGTCCTCCGTCCCAACCCCTGCGAGCTACCACAACAC
TGCACATCTCATCTGCTCTCCCCCCGGATCTCCAGATCTCTCGCGCTCAAGCCTACACCC
ACCCCTCGCCCGCTACGACGTCGCCGCCGCACGCGGTGGCCACGGCGAGATGCTCCGCCT
CAGGGCGTTCCGGCCAACGAGCGACAAGGTGGTGAAGATCCAGCTCCACCCCACTCACCC
CTGGCTCGTCACCGCCGACGCCAATGACCGCGTCTCGGTCTGGGACTGGGAGCACCGCCA
GGTGATCTATGAGCTGAGGGCGGGTGGCGTCGATGAACGGAGGCTGGTTGGTGTGAAGCT
TGAGAAGCTCGCCGAGGGAGAAACTGATTCGAAAGGAAAGCCCACTGAGGCAATCCGAGG
CGGAAGTGTAAAGCA

Homology of Contig U35_32343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46510.2	1354	1e-51	protein\|peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed
Brachypodium v1_2	Bradi2g45380.1	1382	2e-52
Arabidopsis v10	None