barSeed - Barley Seed Development Database

Probe CUST_29912_PI390587928

Source Contig U35_18054

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29912_PI390587928	Hv_44K_v2	CTTCAGGTTCAGGCATTGAACAGAAGTTTTACACCTGAACAATTGTGTTGTTTCTGCACC	1313	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.485	1.492	1.033	1.111	0.410	0.598
Raw	28.419	48.165	27.092	49.002	4.671	8.954

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362947	1474	7e-23	1390 - 1449	98	59 / 60	plus	ABC07908
MLOC	MLOC_37646.2	1310	7e-23	1225 - 1284	98	59 / 60	plus	ABC07908
MLOC	MLOC_37646.1	1760	7e-23	1671 - 1730	98	59 / 60	plus	ABC07908
JLOC1	JLOC1_24389.2	1351	4e-23	1264 - 1323	98	59 / 60	plus
JLOC1	JLOC1_24389.1	1315	4e-23	1228 - 1287	98	59 / 60	plus
Harvest21	ABC07908	1396	3e-25	1295 - 1354	100	60 / 60	plus	ABC07908
Harvest35	U35_18054	1415	3e-25	1314 - 1373	100	60 / 60	plus

Contig Sequence (1415 bp)

>U35_18054 1415 Hv_44K_v2
CAGCAAAGACCATTTCTTTCCATCCTCCGGCGCGTCTCCGGTCTGCATCGCACCACCGCG
TCGGCGTCGCGGCCCATGGAGCTCGCGGTGAGAGCCGCGGCGGCCTCCTGCTCCTCCTCC
CGGTCGCTCCACCCCCCGCGCGTCCCCTGCCTCCTTGCCCGCGGCCCGGGCCTGCCGCTG
CCGGCTCGCCGCGTGACCGTGGCCGCCGCGGCGGCCGTCGCCCTCGACCCGTTTCAGGAG
ATCAAAACAGACCTGAATGGCGCCTCAAAAACCGAGGTGTTCGCGTGCCCTGTTTGCTAT
GAACCGCTGATAAGGAAAGGGCCGCCAGGCATGAACCTGCCAGCGATTTATAGGTCTGGA
TTCAAGTGTTCAAAATGCAACAAGTCATTCACCAGCAAAGATGTCTTCTTGGATCTCACT
GTCACCTCAGGAATGAAACAATACAGTGAACTGAAACCTGCTAGAACCGAGCTGTTCAGG
AGCCCGCTCGTCTCTTTTCTTTACGAGAGGGGGTGGCGTCAGAACTTCAATCGGAGTGGC
TTCCCTGGCCGCGATGAAGAGTTCCAAATGGCGCAAGACTATTTCCAATCAGTCGCTGGT
GGCATACTTGTTGATGTCAGCTGCGGCAGTGGCTTGTTTTCAAGGAAGTTTGCAAGCTCT
GGGGCATACTCGTCTGTGATTGCTTTGGACTTTTCTGAGAATATGCTCCGCCAATGCTAT
GACTACATCAAACAGGAAGAAACCCCTATGAACACGAACCTTGCACTTGTAAGGGCTGAT
ATTTCGAGGCTCCCTTTTGCTTCATGTTCAATTGATGCCATTCATGCTGGAGCCGCTATC
CACTGTTGGCCATCCCCTTCAAATGCGATAGCTGAAATCAGCCGTGTGCTGAAGCCCGGC
GGCGTATTCGTAGCGACAACCTTCTTATCCACCCCCACGAACAGCGGCCTGTTCTCTATC
GACGCACTAAAGCCACTGAGACAGATTGTCGGGCCAGTGAACAGCAGCTACAACTTCTTC
ACCGAAGGAGAGCTGGAAGACCTGTGCAGATCCTGTGGCCTGGTCAACTACAGCAGCAAG
GTTCAGAGGTCATTCATCATGTTCTCTGGGCAAAAGCCGTAGCTGAGTATCACATCCAGA
CTTTCTTTGTATAGCCAGCCATGGTGCATATATAGTTGTGCTTCTTTTTTACGAGTATAT
GTATAGCTGTTACGGTTAAGTCGGGTGATGAAAATGTAACTCAAACGCACATCAGGTGAT
TGAACCAAAATGTATGGTCTCTGGCTCTGATGAACAATAGTACTGTAGCATTTCTTCAGG
TTCAGGCATTGAACAGAAGTTTTACACCTGAACAATTGTGTTGTTTCTGCACCATAAATA
AAATTTTAAATTAACTGTGAAAAAAAAAAAAAAAA

Homology of Contig U35_18054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43800.1	346	0.0	protein\|methyltransferase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g30656.1	357	0.0
Arabidopsis v10	AT2G41040.1	352	2e-128	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:17121499-17123064 FORWARD LENGTH=352