barSeed - Barley Seed Development Database

Probe CUST_29910_PI390587928

Source Contig U35_18055

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29910_PI390587928	Hv_44K_v2	GTACTTGCTCCTTAAGATTATCCGCCCAATACAGCAATTTTTATCAGTTAGCAAGAAAAA	1267	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.990	1.656	1.565	1.390	0.621	0.611
Raw	208.098	568.785	447.350	631.213	97.474	106.563

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_18055	1339	3e-25	1268 - 1327	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_18055 1339 Hv_44K_v2
CGCCACTCCTCCCTCCCTCCCACGGCACCCACCCCGAGGCCAGGCAGGGATCCCGAATGC
AATCGCGGGCCGCAGCTGCGTAGCCGCCGCGAGGGCTCCACAGCGCGATCGAGGAGGGAG
GGGGCGCCGCGAGGGCTAGCTGCGTGGCGCGTGCGTGCGTGCCCCGGGGTTGGATGAGAA
GGGCGAGGGCGGCGGCGGCCGAGGAGGATGCGGAAGGCGTACAGGGACTCCCTCAAGGTG
CTCGAAGCTGACATCCAGCACGCCAACACCCTGGCGACTGAATTTCCACGGGAGTACGAT
GGCGCGTGCCTGCAGATGCGGCTCTCCTTCAGCCCCGCCGCGCACATATTCCTCTTCCTG
GTGCAGTGGACGGACTGCAGCCTCGCTGGGGCTCTCGGGTTGATGAGGATCCTCATATAC
AAGGTCTACGTCGACGGCACAACCACCATGTCGACCCATGAGAGGAAAGCCAGCATCAAG
GAATTCTATGCTGTAATATTTCCTTCTTTGCTGCAACTGCAAAGAGGGATTACTGATATG
GAGGACAAGAAGCAGAAGGCCGTGTGCATGGAGAGGTACAGAAGGAGAGATGAAGACGAA
GCAACCAGCTTATCTGATGTTGATGCTGAAAGGGAGGAGGAATGTGGGATCTGCATGGAG
ATGAACAGCAAAGTTGTGTTGCCCAACTGCACACATGCGATGTGTCTCAGATGCTACCAG
GACTGGAACTCGAGGTCACAGTCCTGCCCATTCTGCCGTGACAACTTGAATAAGACTGAC
CCTGGTGACTTGTGGATTTACGTCGAGGATGATGACGTGGTCGACATGGAGACGGTATCA
AGAGAGAACCTCAGACGGCTGTTCATGTACATAAACAAGCTCCCTCTGATCGTGCCTGAT
GTCATCTTCAGTGTCTATGATTCCCACATAAAATGAATGGCGTGGCACTCCCCTAGTCAA
GGTCCTCAGCCAAGTGCCCAGCTCCTTTTAATCTATTTCCGAAGCTCTCAAGCCCTCTGA
TTTCCATGCTTGTACTCAAGCTCTTCGAAGTCATTTGTAGTCGCAAACCTTTTGTTTGTG
CTTTAGATCTTATTTAGTGAGTGCCTGCATGCTTAAGCTAAGCATATCCAGCCAGTTTGT
ATATATCTCACATGGCTCTGTTAATAGAGAACTGTAGCTTGCCCCGAATGGAGGCAGTGC
TGTTTCATATCTTCCCATGTTTTATTCCCCTTTGTATAACTGTCTTCAGGTTTGAGCACT
GAAGCTGGTACTTGCTCCTTAAGATTATCCGCCCAATACAGCAATTTTTATCAGTTAGCA
AGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35670.1	243	3e-152	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi3g30040.1	243	4e-154
Arabidopsis v10	AT5G58787.1	242	4e-111	RING/U-box superfamily protein \| chr5:23742733-23744324 FORWARD LENGTH=242