barSeed - Barley Seed Development Database

Probe CUST_298_PI390587928

Source Contig U35_20051

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_298_PI390587928	Hv_44K_v2	CACATACATGTATGTTTGAGAGATTCATGAGCATAGAATGACGGAAACCTATTTTTCACA	1231	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.743	0.843	0.549	1.011	4.757	16.190
Raw	3.241	6.535	3.152	15.088	24.973	93.092

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_31134.2	1176	8e-25	967 - 1026	100	60 / 60	plus
Harvest21	ABC12311	1325	3e-25	1232 - 1291	100	60 / 60	plus	ABC12311
Harvest35	U35_20051	1325	3e-25	1232 - 1291	100	60 / 60	plus

Contig Sequence (1325 bp)

>U35_20051 1325 Hv_44K_v2
GAAAAGGTTGGAAGAACTCCATATTGGTTCGCCTGAGAATGGATTATGAAGTGCCTTCCC
AAACGGAATGGTGGGCATAATTAGTTGAAGATATATGCAAAACCATACATAGAATGTACC
ATGCATTTACGTGGTAATTCTAAAATTGTGAGTTAAAACTAGCCGTCTTAATCCAGATTA
ATTTCCTCATGAAACAATTTAGCGGTACTACTAAAAAAGTTGAATTCATATTGTAATACT
ATGAAAAAGGTAACGTAAGTACTCTTCAAAAGAATACATAATGTCAACAATCTTTGTAAT
GGGTCCATTATTGGCCAACACAAAATCTTTCAATATTAAAATTTTGAAATAAGGTTGTAT
CTTTGTAATGCAGCAATGTCACAGGAATTTGAGAGGAAACAGTTCAATCTTCGCTTGTCG
TAATTTGGATGGAGGATACAACATTTGTGACCTATTGGTGTTAGCCTTTTTATACCAAGG
TACTAGCTAGAATAAATTGTTCCAAAAAAGCAAAATCATTTGGAAGTTCTGCAATTACAT
GCACTGCCGGCACTATATTAACCCCTTCGCCCCCTCCCCTTGCACACACACAAAGATATA
AAAAAGGTTTTGGAAATAGAATGTGCACACACTATATAAACCATTTCCTCCTCCTCCTCT
ACACATTGGGTAGTTGAATATTCTCAAAGACAAGCGATCAGCACCACCTTTGCTAGGTGA
AACTGCTTGCAATGGAACTTCCAGGGGCATCATCTCGGCGCTCGATGGGTATGTCATTGG
CCTCACTTCTAAAGCGATTTAGTGGCATAGCACAATCGCCAAAAGGGTGCCGCTACAACC
CAGAGAGTGCCGGCATCGGGATTGTGTCGGTTGTTATGGAACCAACCGCTGCACACGTAC
GCATCGTCAGGCCTATCATCCACATCAACGCTCGTGAGATCCTAGAGGTTACACTACCAA
ACCTCTGTAGGAGCAATAGGAGGCCATTCCGAGCAGCCATACTGTCGTGCGGTCTATGCC
GCACCTGGATCGGTAGTGGTACCGTCTACATGTTCAAAGGTGAGACGGGATTCTGTACAC
AAGAGTGTCTCGGTCATTATATCATGGAGCAATTTGAAAAGCAGAGACATAAGGTGAGGT
GGTGTAGCAGAGAAAAGGTGCCACCAATGGCGGGCGATAAGGAAGGCGATCAGAGCTGCA
TTTTCTTCACTTGTGCTGGCAGCCTATGATACACATACATGTATGTTTGAGAGATTCATG
AGCATAGAATGACGGAAACCTATTTTTCACAATGTATAATTTGGTGATTTTGTAAGTAAT
AGAAC

Homology of Contig U35_20051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None