barSeed - Barley Seed Development Database

Probe CUST_29898_PI390587928

Source Contig U35_20375

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29898_PI390587928	Hv_44K_v2	CATTGTAACATCAGCAGAAATGCGGTTAGTGTGTTTATGCATTTTATTCGTGCCAAAAAA	1050	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.064	2.079	1.223	0.672	0.271	0.233
Raw	903.555	1404.024	725.580	626.651	88.066	83.389

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19179.1	1518	3e-21	24 - 77	100	54 / 54	minus	ABC16447
MLOC	MLOC_19179.3	1821	3e-21	18 - 71	100	54 / 54	minus	ABC16447
MLOC	MLOC_19179.2	1405	3e-21	23 - 76	100	54 / 54	minus	ABC16447
JLOC1	JLOC1_13304.2	1866	2e-21	1680 - 1733	100	54 / 54	plus
JLOC1	JLOC1_13304.1	1572	2e-21	1386 - 1439	100	54 / 54	plus
Harvest35	U35_20375	1121	3e-25	1051 - 1110	100	60 / 60	plus

Contig Sequence (1121 bp)

>U35_20375 1121 Hv_44K_v2
GCTGGTTTTGGGTCATTTCAGCTGTCCCCTTCTACTTCGCAACCTGGGAACACTATTTTA
CAAACACACTTGTTCTTCCAGTAGTCAATGGGCCGACTGAAGGCCTTATGCTGATCTATG
TGTGCCATATCGTCACCTTTTTCACAGGGGCTGAATGGTGGGCACAGGATTTCCGAAAAT
CAGTCCCCCTCCTTAATTGGCTGCCTCTTGTTCCTGAAATCTCCCTATATGGCATTGTGC
TGTTTCTAATGATTGCTTTTGCTGTAATCCCGACGATTGGCTCTAACACTCACAATGTTT
ACAAAGTCGTCGTCGCAAGAAAAGGAAGCATGCTGCTGGCACTAGCAATGCTCTTCCCTT
TCGGTTTACTGATGGCGGGAACTCTTGTGTGGTCCTATCTATCTCCTTCAGATATAATGA
GAAACCAACCACACCTGCTAATTATTGGAACTGGTTTTGCGTTTGGCTATCTTGTGGGAA
GAATGATTCTGGCTCACTTATGTGATGAACCCAAAGGTCTGAAGACAGGAATGTGCATGG
CCCTAGCATATTTTCCTTTTGCAATTGCTAATGCGCTGACTGCCCGACTTGATGATGGAA
ACCCCCTTTTTGATGAGCAGCTCGTTCTCCTGATATACTGCTTATTTACAGTGGCGCTGT
ACATGCATTTTGCTACATCGGTTATCCATGAAATCACCAACGCGCTTGGGATTCATTGCT
TCAGAATCACCAGGAAAAAGGCGTAACTCTGTCTTAGTGCACATGCATGTGGTCTTAGTT
GTGGTAATCACATGGTATCTACCGAAGAAGCAAACATGCCTACTTGTCTTCGTTATACGG
ATGATGTCCGAATCATCTTTGCATCTGTCATTACAAGGGACACTGTCCCCTGAAAATTAC
ATCAGCACTAAAATTTGTGCCGATGAGAAAACAATGTATGTGAAACAGTTGGCAAAATTT
TGTTGTATTGTTCATAGAGCAGATGCTCAGCAAAAACTTTCTGGAGGAAATGCTGTGCTG
ATTGGCAGAGGTTGCCTTTGTAACTTGTCACATTGTAACATCAGCAGAAATGCGGTTAGT
GTGTTTATGCATTTTATTCGTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20375 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02750.2	342	9e-167	protein\|CDP-alcohol phosphatidyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g01810.1	390	3e-169
Arabidopsis v10	AT3G25585.2	389	9e-127	\| Symbols: AAPT2, ATAAPT2 \| aminoalcoholphosphotransferase \| chr3:9295856-9298271 FORWARD LENGTH=389