barSeed - Barley Seed Development Database

Probe CUST_29891_PI390587928

Source Contig U35_32352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29891_PI390587928	Hv_44K_v2	AATGAGAAGGCACAAAATGCAGAGGACCAGGTGGTTGCTAGTGGAAGTGTGGAAAATGTT	128	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65750.8	1680	2e-24	39 - 98	100	60 / 60	minus	None
MLOC	MLOC_65750.5	4718	2e-24	3199 - 3258	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.7	1368	2e-24	369 - 428	100	60 / 60	minus	None
MLOC	MLOC_65750.3	4847	2e-24	3261 - 3320	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.2	4776	2e-24	3269 - 3328	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.6	886	2e-24	772 - 831	100	60 / 60	minus	None
MLOC	MLOC_65750.4	3385	2e-24	3199 - 3258	100	60 / 60	minus	ABC06980 ABC49743
MLOC	MLOC_65750.1	3102	2e-24	2928 - 2987	100	60 / 60	minus	ABC06980 ABC49743
JLOC1	JLOC1_43288.2	4821	8e-25	1433 - 1492	100	60 / 60	plus
JLOC1	JLOC1_43288.1	4851	8e-25	1463 - 1522	100	60 / 60	plus
Harvest35	U35_32352	279	3e-25	129 - 188	100	60 / 60	plus

Contig Sequence (279 bp)

>U35_32352 279 Hv_44K_v2
ATGAGAAAGATGAGGCGGCAAAGCCTGAGCCAGAAAACGATGCAAGTCCTGAGGTTATCA
ATGACATTAGCTCGGAGAGTTTGGTGAAGCTTGCTCCTTCAAGCGCAGACATTCCGCTTA
CTGAAAGCAATGAGAAGGCACAAAATGCAGAGGACCAGGTGGTTGCTAGTGGAAGTGTGG
AAAATGTTGGTGTTGAGAAGCCTACAGAGGTTGAGAGTGTTGTTGCTGGTGGCGATGATG
TTATCTTGTCCCGGGAGCTGGCTCCAGAACCTGTCAAGG

Homology of Contig U35_32352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None