barSeed - Barley Seed Development Database

Probe CUST_29889_PI390587928

Source Contig U35_18060

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29889_PI390587928	Hv_44K_v2	ACCTTCAATTTCCTGTTGGTCTGAACATTTGTGGAAGGTAAAAACCTGATATTTACAGTT	1411	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.112	1.894	1.141	0.856	0.380	0.412
Raw	3273.257	4553.427	2449.243	2861.646	449.463	531.009

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45507.1	2580	4e-23	2322 - 2381	98	59 / 60	plus
Harvest21	ABC08501	1133	3e-25	1033 - 1092	100	60 / 60	plus
Harvest21	ABC37721	521	1e-23	28 - 87	98	59 / 60	minus
Harvest21	ABC08500	1403	1e-23	1304 - 1363	98	59 / 60	plus	ABC08500
Harvest35	U35_18060	1512	3e-25	1412 - 1471	100	60 / 60	plus
Harvest35	U35_18061	632	1e-23	533 - 592	98	59 / 60	plus

Contig Sequence (1512 bp)

>U35_18060 1512 Hv_44K_v2
GGGATGATGAGGCAAAGAAAGCTTCTCGGCTTGAGCAGAAGATCAAACTGCTGACACAAG
GATACCAGGCTCGGGCTGCAAAATTGGGGTCACAGATCCAGGACACCTTCAAGCAGATGA
ACACTGCAGCCACAGAACTTGAATGCTTCCAAGAGTTGCAGAAACAAGAACAGATGGCTG
CTGCCTATCGTGTGAAAAATTTGTCTGATGAAGTGAATAAACAGAAAGCATTAGAACGGA
CTCTCCAGAGCCGCTATGGTGATCTGCTGTCTGGATACCAGAGCATCCATGAACAACTTG
AGGAGCACAAGAGGCTACTTAGGCTACAGGCAGAGACAATAGAGGCAGAAAACCGTGCTA
AGGAAGAGGCAATAGAGGCAGAAAACCGTGCTAAGGAGGAGGCAATAGAGGCAGAAAACC
GTGCTAAGGAAGCGGCAATAGAGGCAGAAAACCGTGCTAAGGAGGAGGCATTAGAGGAAG
AAACCCGTGCTAAGGAGGAGGAAGCTGCAGCTCAAAATCGTGCTGCTGAGGAAGAAAATG
AGAGGAAGAATCATGACATTGAAGAGGAATCAGGACAGACGAATATGGTTACTGATGAAG
AAGCTGCAGGAAGCAAAGAAATCAAGGGGGATCAGATGGACATGGACAATGCAGATGTAG
ATGGAGACCTTGTAGGTCCTATTCCTCCATTGCCTGACACTCAAGTGGATAACGATGGGG
CTTCAGTTGGACAGACTACTTCTAATGCTCAGAGTGGGGACAGCGTTACCATGAACGAGG
GCGCCATTGACAAGGTTGATTCATCCAAATTAGATGACCAGGACAATACCAATTGTAGCA
TGGATGTTGATGCTGGTAGCCAAGAAGAGGGGGAAAATGTTCCTAAGGCTGCTGCTACAA
GTGTAGATGTAGGGAACACACCTGTATCTTCGGATCAAGCTGTCTCTAATGAAGGGAGCG
ACGCGGTTCACGCACCTGCATCTTCAGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGG
TTCACGCACCTGTGTCTTCAGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTCACG
CACCTGCATCTTCAGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTCACGCACCTG
TGTCTTCAGGTCAAGCTGTCTCTAATGAAGGGAGTGACGCAGTTCACGCACCTGCATCTT
CAGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTCACGCACCTGTGTCTTCAGATC
AAGCTGTCTCGAATGAAGAGAGTGATGCCGTTCCTGAATAAAACATCTTCCGCATACCTC
ATCTGCGGCGGATGTCACAGGCATGACGCCAAAGGTGACTACTGAACACTAGCTCACGTA
CCATGTTTATTTTGTTAATTTTCTTCAGGCAACCTTCAATTTCCTGTTGGTCTGAACATT
TGTGGAAGGTAAAAACCTGATATTTACAGTTTTCTATTGAGAATATGAACTTGAGAAAAA
AAAAAAAAAAAA

Homology of Contig U35_18060 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g28090.1	973	9e-77	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi4g07110.1	983	6e-113
Arabidopsis v10	None