barSeed - Barley Seed Development Database

Probe CUST_29888_PI390587928

Source Contig U35_18061

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29888_PI390587928	Hv_44K_v2	TCAGTTTCCTGTTGGTCTGAACATTTGTGGAAGGTAAAAACCTGATATTTACAGTTTTCT	536	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.056	1.895	1.147	0.816	0.385	0.406
Raw	2565.280	3686.717	1973.010	2178.724	365.255	419.341

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_45507.1	2580	8e-25	2326 - 2385	100	60 / 60	plus
Harvest21	ABC08500	1403	3e-25	1308 - 1367	100	60 / 60	plus	ABC08500
Harvest21	ABC08501	1133	1e-23	1037 - 1096	98	59 / 60	plus
Harvest21	ABC37721	521	8e-21	26 - 83	97	56 / 58	minus
Harvest35	U35_18061	632	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_18060	1512	1e-23	1416 - 1475	98	59 / 60	plus

Contig Sequence (632 bp)

>U35_18061 632 Hv_44K_v2
TGAACGAGGGCGCCATTGACAAGGTTGATTCATCCAAATTAGATGACCAGGACAATACCA
ATTGTAGCATGGATGTTGATGCTGGTAGCCAAGAAGAGGGGGGAAATGTTCCTAAGGCTG
CTGCTACAAGTGTAGATGTAGGGAACACACCTGTATCTTGGGATCAAGCTGTCTCTAATG
AAGGGAGTGACGCGGTTCACGCACCTGCATCTTCAGATCAAGCTGTCTCTAATGAAGGGA
GTGACGCGGTTCACGCACCTGTGTCTTCAGATCAAGCTGTCTCTAATGAAGGGAGTGACG
CGGTTCACGCACCTGCATCTTCAGATCAAGCTGTCTCTAATGAAGGGAGTGACGCGGTTC
ACGCACCTGTGTCTTCAGATCAAGCTGTCTCGAATGAAGAGAGTGATGCCGTTCCTGAAT
AAAACATCTTCCGCATACCTCATCTGCGGCGGATGTCACAGGCATGATGCCAAAGGTGAC
TACTGAACACTAGCTCACGTACCATGTTTATTTTGTTAATTTTCTTCGGGCAACCTTCAG
TTTCCTGTTGGTCTGAACATTTGTGGAAGGTAAAAACCTGATATTTACAGTTTTCTATTG
AGAATATGAACTGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_18061 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None