barSeed - Barley Seed Development Database

Probe CUST_29867_PI390587928

Source Contig U35_44339

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29867_PI390587928	Hv_44K_v2	ATCGCCGGTTTTCTTGCTTTCAGAGAGGTATTGCGCACAATATCCGCTTCTTTTCGTGAT	610	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375984	2548	2e-24	699 - 758	100	60 / 60	plus	ABC11195 ABC23507 ABC24670 ABC45247
MLOC	MLOC_23456.1	659	2e-24	157 - 216	100	60 / 60	minus	None
MLOC	MLOC_23456.2	374	2e-24	157 - 216	100	60 / 60	minus	ABC23507
MLOC	MLOC_23456.3	483	2e-24	157 - 216	100	60 / 60	minus	ABC23507
JLOC1	JLOC1_16206.2	376	8e-25	161 - 220	100	60 / 60	plus
JLOC1	JLOC1_16206.1	379	8e-25	164 - 223	100	60 / 60	plus
Harvest21	ABC41975	670	3e-25	611 - 670	100	60 / 60	plus
Harvest35	U35_44339	670	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_44339 670 Hv_44K_v2
GAGTCGTCGGCCTGTTCCCGGAGAGGAAAAGCTCGCCGCCGGCACCGACCGGGCGCCCTC
GCCGTGACAGGTGAGAACCGGGGCGCATTTCTAGCTGCTTGCTCCGACCGCGGCAGCCAA
CACCTCCGCCCCGCCGCCGCCTGCTCCAGCCCCTCCGACCTCAGCCGCCGACCTCGCCGC
CCCGCCGCCGCCTGCTCCAGCCCCTCCGACCGCAACCGCCGAGACCGCCACCTGGCCGAT
TCCTCCTCCTCCAGCCCCAGGACTCGCGGCCCAGGTCTCCCATTTCCCCCCTCCTTTTCC
TCATCAGCCACAGGACTCGGGGCCGAAGAGGCGGAAGCTGAAGGAGGCGGGGTTCCACAC
CTCCGCTTAGTACAAAATCCGGGCCAACGTTGCCGACCTACGCCTCCGCTTCGTCCAGGT
TCACGAAGCTACTGATTTCCGAAAGAGTGATGCTGCTGGCGAGATTCTGAGAGGTAATTT
TGTTTATTTCTTCAATCCCCAGCAGCGATTTTTGGAAATCGATTTCCTCAATCCCCATAG
ATTTCTGGATGCTGATACTTTGGAAATTGTCCATGAGGAGTTTGATGTTGTCCGGATGCA
AGTGTCGTACATCGCCGGTTTTCTTGCTTTCAGAGAGGTATTGCGCACAATATCCGCTTC
TTTTCGTGAT

Homology of Contig U35_44339 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None