barSeed - Barley Seed Development Database

Probe CUST_29850_PI390587928

Source Contig U35_18075

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29850_PI390587928	Hv_44K_v2	GTGTACCTGTCTTTAATAGGGATATTGTGTACTCGTGTTAATAGTGGAGTAAAAGTTTGA	1135	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248152.1	1382	2e-24	1290 - 1349	100	60 / 60	plus	ABC08384
MLOC	MLOC_76824.1	2765	7e-23	1477 - 1536	98	59 / 60	plus	ABC08384 ABC11681
MLOC	MLOC_76824.2	1843	7e-23	739 - 798	98	59 / 60	plus	ABC08384 ABC11681
JLOC1	JLOC1_51243.1	1651	4e-23	1291 - 1350	98	59 / 60	minus
JLOC1	JLOC1_51242.1	2199	4e-23	662 - 721	98	59 / 60	plus
Harvest21	ABC08384	1220	3e-25	1103 - 1162	100	60 / 60	plus	ABC08384
Harvest35	U35_18075	1253	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1253 bp)

>U35_18075 1253 Hv_44K_v2
GGGGGGCACTGTACTAGCCCGAGCCGGAGGGAGAAGGGTAAAGAAACAGGCCAAGAAATC
CACTGACGGCCGGCGGGGAAAGGCGCCCTGGGCGATGGGAACAGTGCTGGACTCCCACTT
CCTGGCGCTCACCGCCATCGTCACCGTCGGGTACCAGCTGGTGTTCTTCATCATCACAGC
TCTCCTCCGCATCGACAAGGTCACCGATTTCGCCGGCAGTACAAATTTCATCATAATTGC
GGTCCTGGTAGCAGCTTTGAAGGGAACATGGCACTTCCGTCAGATCGTGTTGACAGTGCT
TGTTATAATTTGGGGGCTTCGCTTGGCAGTGTTCTTACTAATGAGGATTTTGCAATGGGG
AGAGGACAAACGGTTTGATGAGATGCGCAGTAACTTGGGGAAATTAGCTGTCTTCTGGAC
TTTTCAGGCTATCTGGGTTTGGACTGTCAGCTTGCCTGTTACTATTGTGAATGCAAGTAG
CAGCAACCCTTCTATTGAAGCTCGGGATATCATTGGTTGGATAATGTGGGCCATCGGGCT
ATTTGTGGAAGCCATAGCTGATCAGCAGAAGCTTAAATTCAAGAATTCTCCAAGCAATAG
GGGAAAGTGGTGTAATGTTGGTCTTTGGAGTTATACTCGCCACCCAAATTACTTTGGGGA
GATACTCCTTTGGTGGGGGGTGTTTGTAGCATCAACTCCGGTTCTCTCAGGAGCTGAATG
GCTTGTAATCTTGGGACCCATCTTCCTGGCGCTCCTGCTTCTTTTCGTTAGTGGGATTCC
ACTTCTTGAGTCATCTGCTGATAAGCGCTTCGGCCGGTCTGAGGAATACCGCACATACAA
GAAAACCACAAGCCCTCTGATCCCATTGCCGCCGGTCGTGTATGGAGCCCTGCCTGATTG
GTTCAAGGTGGCATTCCTCCTGGAGCTGCCCCTCTACAACCCCGGGCCGGAACGCGACCC
CGTCAGCTGAGCGCCGAATGTGCTTTGTTCTTCAGATCACAAGTGATTATACATGTAATG
TACTGATTTTATTTTGGATGGGTGATTCTTTTCCCATTGATTTCAAGGGGTTTACGGTGA
AGTTTGTCCATATGTATCTATCTTCCAGGATGTTCAAAAATCAAAAGCATAGACTGTGTA
CCTGTCTTTAATAGGGATATTGTGTACTCGTGTTAATAGTGGAGTAAAAGTTTGATTTTA
TTTTGTACCAAATCCTGTATGAAAGTCTGTTTTTCTCTAGTTTCTATTGAATT

Homology of Contig U35_18075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g50070.1	292	2e-177	protein\|DUF1295 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g11150.1	393	0.0
Arabidopsis v10	AT1G73650.3	302	3e-141	Protein of unknown function (DUF1295) \| chr1:27688409-27690165 REVERSE LENGTH=302