barSeed - Barley Seed Development Database

Probe CUST_29848_PI390587928

Source Contig U35_11895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29848_PI390587928	Hv_44K_v2	GTGACAAAATGGAGACAGCTATCAATATTGGCTTTGCATGTAGCCTACTTAGACAAGGAA	540	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51073.4	4703	2e-24	2844 - 2903	100	60 / 60	plus	ABC15864
MLOC	MLOC_51073.3	4594	2e-24	2753 - 2812	100	60 / 60	plus	ABC15864
MLOC	MLOC_51073.1	3328	2e-24	2753 - 2812	100	60 / 60	plus	None
JLOC1	JLOC1_32592.1	4974	8e-25	2748 - 2807	100	60 / 60	plus
Harvest35	U35_11895	603	3e-25	541 - 600	100	60 / 60	plus

Contig Sequence (603 bp)

>U35_11895 603 Hv_44K_v2
GAGAATTAGGGTTTGAGTTTTACAAGAGGACACAGACAAGTATAGTTATTCGTGAACGCA
ATCCTAACCAGAACGTTGAAGATTATCAGTATAGAAAATATGAGCTCCTAAATGTCTTGG
AATTCAGTAGCTCACGAAGACGGATGTCTGTGATAGTGAAAGAACCGGAGGGAAGGGTAT
TACTGTTTAGCAAGGGCGCTGATAGTGTGATGTTCAGAAGGCTTGCACCAGATGGAAGAA
AATTTGAGGAAGAGACTAAAAAGCACATAAATGAGTATTCTGATTCTGGTCTAAGAACGT
TGGTTCTTGCATACCGTGTCTTGGATGAGAAAGAGTACCAGAGCTTCGCTGAAAAATTCA
GGACTGCCAAAATATCTGGAAGTGCCGACAGAGATGAACAAATTGGGGAGGCTGCTGACA
GCATTGAGCGGGACTTGATTCTTCTTGGTGCTACTGCTGTTGAAGACAAGCTCCAGAAAG
GGGTACCAGAATGCATTGACAAGCTTGCACAAGCAGGAATTAAGATATGGGTGTTGACGG
GTGACAAAATGGAGACAGCTATCAATATTGGCTTTGCATGTAGCCTACTTAGACAAGGAA
TGA

Homology of Contig U35_11895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g29380.1	1208	7e-103	protein\|phospholipid-transporting ATPase, putative, expressed
Brachypodium v1_2	Bradi1g42310.1	1204	5e-117
Arabidopsis v10	AT1G68710.1	1200	1e-82	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein \| chr1:25793498-25797975 REVERSE LENGTH=1200