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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29844_PI390587928Hv_44K_v2TAAGGAGAAGACTCACCATTGATATTGCCCTGTGGAAGTTCGAGACCACCAAGTACTACT71GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.6750.7452.2642.6361.1470.877
Raw 2107.0003504.7179766.94018037.4272819.6002321.003



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC492976913e-2572 - 13110060 / 60plus
Harvest35U35_478266913e-2572 - 13110060 / 60plus



Contig Sequence (691 bp)

>U35_47826 691 Hv_44K_v2
GCCACCCCGCCGCCGCCCCCTCTCGGTTCCTTCTCCATCCTTCATTGGAGCTAAGCACGT
TCAGCCATGGGTAAGGAGAAGACTCACCATTGATATTGCCCTGTGGAAGTTCGAGACCAC
CAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTTCATCAAGAACATGAT
TACTGGTACCTCCCAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGTGGTTT
TGAGGCCGGTATCTCCAAGGATGGCCAGACCCGCGAGCATGCCCTCCTTGCTTTCACTCT
TGGAGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGACGCCACCACACCCAAGTACTC
GAAGGCCCGTTATGAGGAAATCGTCAAGGAAGTCTCTTCCTACCTGAAGAAGGTCGGCTA
CAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGGTGACAACATGATTGA
GAGGTCCACCAACCTTGACTGGTACAAGGGCCCTACCCTTCTTGAGGCTCTTGACCAGAT
CAATGAGCCCAAGAGGCCCTCGGACAAGCCCCTGCGTCTTCCCCTTCAGGATGTTTACAA
GATTGGTGGCATTGGAACTGTGCCCGTGGGCCGTGTTGAGACTGGTGTCATCAAGCCTGG
TATGGNTGTTACCTTTGGGCCCACTGGTTTG



Homology of Contig U35_47826 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g08050.14483e-143protein|elongation factor Tu, putative, expressed
Brachypodium v1_2Bradi1g06860.83262e-146
Arabidopsis v10AT5G60390.14495e-143GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449