barSeed - Barley Seed Development Database

Probe CUST_29843_PI390587928

Source Contig U35_11898

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29843_PI390587928	Hv_44K_v2	CACTGGACAGCACCAGGATGTTGAGCAACCATTGATTAAACATGATGGTGATTGTGAGAG	771	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366692	1795	2e-24	929 - 988	100	60 / 60	plus	ABC12283
MLOC	MLOC_55970.3	1674	2e-24	846 - 905	100	60 / 60	plus	ABC12283
MLOC	MLOC_55970.2	1665	2e-24	889 - 948	100	60 / 60	plus	ABC12283
MLOC	MLOC_55970.1	1750	2e-24	878 - 937	100	60 / 60	plus	ABC12283
JLOC1	JLOC1_36150.3	1895	8e-25	913 - 972	100	60 / 60	plus
JLOC1	JLOC1_36150.2	1977	8e-25	995 - 1054	100	60 / 60	plus
JLOC1	JLOC1_36150.1	1756	8e-25	774 - 833	100	60 / 60	plus
Harvest21	ABC23853	836	3e-25	772 - 831	100	60 / 60	plus
Harvest35	U35_11898	836	3e-25	772 - 831	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_11898 836 Hv_44K_v2
GGGATACCCGGCCGGCCACCGGCGTCCAGAGCAGGCACAGATGGACAGCCATAATTCATC
ACCGCCCCATGTTCCGGAAGTAACCATGGACATCTCATCCGTTTCTGGAGCAGCTGGGAA
CAAAGTTTGCAGAGGTGCTGCTTGCGACTTTTCTGATGCCGGTAACACCTCGAAAGATTC
AAAGGAGAGGTCTGCATCCATGAAGAAGCTCCTAATTGCTGTGATCCTTTGTGTTATATT
CATGGCGGTTGAAGTGGTTGGAGGCATCAAAGCAAACAGTCTTGCAATCTTGACTGATGC
TGCCCATCTCCTTTCGGATGTTGCAGCATTTGCCATATCTTTGTTCTCCCTATGGGCAGC
TGGTTGGGAAGCGACACCTCAGCAGTCATATGGATTTTTCCGTATAGAGATTCTTGGGGC
ATTGGTTTCCATTCAGCTTATATGGCTCCTTGCTGGCATACTTGTCTACGAAGCTATTAT
GAGGCTCCTCAATGAAAGTGGAGAGGTACAGGGCTCCCTCATGTTTGCTGTATCAGCTTT
TGGTTTGTTTGTTAACATCATAATGGCAGTGTTGCTTGGTCATGACCATGGGCACGGTGG
ACATGGGCACAGCCATGGTCACGGCCATGGACATTCACATGACCATGATCATGGTAACTC
AGAGGATGACCATTCCCATCATGGAGATCATGAGCAGGGCCATGTACATCACCATGAGCA
CAGCCATGGAACTTCTATTACCGTTACGACTAATAATCACTCTCATTCGAGCACTGGACA
GCACCAGGATGTTGAGCAACCATTGATTAAACATGATGGTGATTGTGAGAGTGCCC

Homology of Contig U35_11898 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g03780.1	419	3e-103	protein\|cation efflux family protein, putative, expressed
Brachypodium v1_2	Bradi4g43740.1	414	5e-109
Arabidopsis v10	AT2G46800.1	398	9e-77	\| Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 \| zinc transporter of Arabidopsis thaliana \| chr2:19238128-19239324 FORWARD LENGTH=398