barSeed - Barley Seed Development Database

Probe CUST_29840_PI390587928

Source Contig U35_47828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29840_PI390587928	Hv_44K_v2	TGAAGTTAGAACAAAAGGACCTGTCAGAAGTTCTATCCCTGGGTGAGGAGAACTGCATCA	698	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364743	4030	3e-22	2268 - 2326	98	59 / 60	plus	ABC32264
MLOC	MLOC_16571.3	2313	3e-22	1976 - 2034	98	59 / 60	plus	ABC32264
MLOC	MLOC_16571.2	2225	3e-22	1791 - 1849	98	59 / 60	plus	ABC32264
MLOC	MLOC_16571.4	603	3e-22	162 - 220	98	59 / 60	plus	ABC32264
MLOC	MLOC_16571.1	2360	3e-22	1918 - 1976	98	59 / 60	plus	ABC32264
JLOC1	JLOC1_11416.1	2237	1e-22	1795 - 1853	98	59 / 60	plus
Harvest21	ABC49300	764	3e-25	699 - 758	100	60 / 60	plus
Harvest35	U35_47828	764	3e-25	699 - 758	100	60 / 60	plus

Contig Sequence (764 bp)

>U35_47828 764 Hv_44K_v2
GTGGGAGGCTCGCTGCTACCGAAAGCAAGGCCAAGGAGAAACTTAAGAATAGTGGCGAGG
TGGAGAATGAGGAGGCAACTGCAGTCCACAATGCAACAGGATCAATTGTTTCATCAAATA
GCGCACCTTCAAAAGAAAAACCTGAACATGGTGGTGTTCTTCGGCATGGGAGGAGCGGAA
GAGGTTCTGTGGATGTAAAAGGGTGCACTTCAATATCAGAAGAAAATTTGGATGCTACAG
GAACAACAAAACCACAAAAATGTGGAAGAACCGGAGAAGAAAATAATGAAAGTAAAGTGG
GGCGCTCCATGATGACTAAATCTTCTGACTGCAAAACTTCACTCAGTCATGAACAGACTC
TGAATTGCAAGCCTACCGTTACAGCAGCTGAACCAGACGATGACCTAGAGGAACTTTTAG
CTGCTGCAAATGCTGCTCGCAGTGCTATCATTGGTGCATATTCTGGACCTTTTTGGAAGG
AGATGGAACCAATGCTAACTTTCATACGCTCTGAAAATTTAGCTTTCTTAGAGCACCAGA
TTGACCTTGTGGAAGAGCTTGAGATGAACATGTTCTGTGGTGGACATAATGCCATAGCAT
CCACCGACTACAGCAAACCACAAACGATGGAGGGAGATTTCTTCTCAGGTGCTGCCTGCA
TGTAATTCCTCTCTCTCACCTGAGCTAAGCAAAACTAATGAAGTTAGAACAAAAGGACCT
GTCAGAAGTTCTATCCCTGGGTGAGGAGAACTGCATCAATGGGC

Homology of Contig U35_47828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01690.1	1211	1e-53	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None