barSeed - Barley Seed Development Database

Probe CUST_2983_PI390587928

Source Contig U35_11327

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2983_PI390587928	Hv_44K_v2	AGATTCTTGAGCCTCCAGCTTCATACCAGCCCATACGCACCCCTGCAAGGAAGCTGCTTG	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70787.1	4762	2e-24	3395 - 3454	100	60 / 60	minus	ABC12455
MLOC	MLOC_70787.2	4471	2e-24	3104 - 3163	100	60 / 60	minus	ABC12455
JLOC1	JLOC1_46996.3	4481	8e-25	1309 - 1368	100	60 / 60	plus
JLOC1	JLOC1_46996.2	4256	8e-25	1292 - 1351	100	60 / 60	plus
JLOC1	JLOC1_46996.1	4754	8e-25	1291 - 1350	100	60 / 60	plus
Harvest35	U35_11327	636	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_11327 636 Hv_44K_v2
AGGTGGGATCAGTCGCAGGACGGCGATGCCGCTGCTGGGGCCAAGAAGTCCAAGACCTCA
GACTGGGATGCTCCTGACGCAACTCCTGGGATTGGGCGCTGGGACGCCACCCCTGGACGT
GTTGGAGATGCCACGCCCTCTGTGAGGAGGAATAGGTGGGATGAGACTCCAACTCCAGGG
AGGATGGCTGACGCAGATGCAACCCCTGCAGCCGGTGGCATTACTCCAGGAGCCACCCCT
TCTGGGGCATGGGATGCTACTCCTAAGCTGCCTGGTGGGCTTGTCACACCAACACCCAAG
AAACAGAGGTCGAGGTGGGACGAGACACCAGCGAGTATGGGGAGTGCAACACCTGGTGGC
ACGGCAGCGACACCTGCAGGTTTCAACACTCCTGGACAGACACCATTTGGGGCAGAGAGC
CTTGCCACGCCAACACCTGGCCATCTTGCTGCTCGTGGCCCGATGACTCCGGAGCAGTAC
CAGCTCTTGCGGTGGGAGCGCGACATTGAGGAGCGGAACAGGCCTCTCACTGACGAGGAG
CTTGACTCCATGTTCCCGCAGGAGGGATACAAGATTCTTGAGCCTCCAGCTTCATACCAG
CCCATACGCACCCCTGCAAGGAAGCTGCTTGCACAC

Homology of Contig U35_11327 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g05310.3	1284	6e-95	protein\|splicing factor 3B subunit 1, putative, expressed
Brachypodium v1_2	Bradi3g03690.1	1280	1e-93
Arabidopsis v10	AT5G64270.1	1269	2e-67	splicing factor, putative \| chr5:25706909-25710718 FORWARD LENGTH=1269