barSeed - Barley Seed Development Database

Probe CUST_29835_PI390587928

Source Contig U35_23873

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29835_PI390587928	Hv_44K_v2	ATTTGTGTCTACTCCTTTGGATGTGGATGTGGTGTTGACTTGTTCCAGTAGGCCAACAGT	6	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.131	0.149	1.158	1.378	1.222	1.297
Raw	15.296	26.821	180.251	320.338	100.880	123.939

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_23873	533	3e-25	7 - 66	100	60 / 60	minus

Contig Sequence (533 bp)

>U35_23873 533 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGGAACAAGTCAACACCACATCCACATCCAAAGGAGTAGAC
ACAAATCCCGAGCTAGGGAAAAACCGATTCCCTTTCTTACCGCACCGCGAGGCGAAGGCG
AGCCTATCACCGGCGGCGATGTTCCTGGTGGGGATAGTGGCGGAGCTGCTGGAGGACTAC
ACGATGCTGGTGGCGGAGGTGCTGGAGCAGCTGCTCAACAGCGCGCCGTTCCCCCGCCGG
ATGCGCACGCTTATGCTGCGGAGCCTCCCCTTCGTGGCCCCGCCGCTGGCGCCGCCCCCG
CCGCCGCACGCCCTCCGCGTCACCACCCGAGGCTGATCGATCCAGCCGCCCGCCTCTGCT
CAGCCTCGTCCGATAGGTTCATTCAGATCGTTCATTTTGCCTCTTTTTTCCGTCCATTCC
GTTGATTCGTTTGGTGTGCAGACCGACTGTACCGCTTGTATTATGATGTCTTATTATCCA
ACTGTGGGAACGAGACAGCCTTCTCCATGGCTTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None