- Probe CUST_29831_PI390587928
- Source Contig U35_23877
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_29831_PI390587928 | Hv_44K_v2 | TACCCTTCCTCCGTTCCCGTCAAATTTAGCTTTTGTTTGAAGAAATAATATGTGATATCA | 313 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.363 | 3.821 | 3.007 | 0.906 | 0.124 | 0.060 |
| Raw | 142.835 | 649.874 | 425.822 | 207.019 | 8.994 | 3.379 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_1652.1 | 532 | 8e-25 | 415 - 474 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52580 | 413 | 3e-25 | 309 - 368 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC20103 | 465 | 1e-23 | 314 - 373 | 98 | 59 / 60 | plus | ABC20103 |
| Harvest35 | U35_23877 | 465 | 3e-25 | 314 - 373 | 100 | 60 / 60 | plus |
Contig Sequence (465 bp)
>U35_23877 465 Hv_44K_v2 CGCCATTGTTGCATTGCATTACGATGGACAAGTACATGCCACCTATCTGTACGTCAGTCC TGCTGTTGTCCCTACTTCTTCTCATATGCATTCCTACTCCTACACTATGTCAAATTATGG ATGGCATGGACAATCGTAAAGTCAGTTTACCAAATGGGTTGTGCGTCCATAAAGAAAAGG TTCATGCCTGCCACGTTAACCGAAAGTGCTACTGTTGTGATGTGACCAACTTGTGCTATC TGACAATCGATTTATGCAAGAAAAATTGTTGAGGTTTGGCATGTATAGTGGCGATGACAA CCCATCTATTTGTTACCCTTCCTCCGTTCCCGTCAAATTTAGCTTTTGTTTGAAGAAATA ATATGTGATATCAAAGATGTATCTGCAAGAAAAATAATATCCCATTTATCGTTTGATTGG TGATGGTGTTGCAAGTAAACTTTGGGCACCACTAAAAAAAAAAAA
Homology of Contig U35_23877 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |