barSeed - Barley Seed Development Database

Probe CUST_29829_PI390587928

Source Contig U35_23879

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29829_PI390587928	Hv_44K_v2	GTCGCTGAGCAGGAGGCTGAGGAACAGCGGGAGCCTCAAGGGCGGCCAGTCGCCCATGTT	310	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371534	3046	2e-24	343 - 402	100	60 / 60	plus	ABC20615
MLOC	MLOC_61372.1	1263	2e-24	375 - 434	100	60 / 60	minus	None
JLOC1	JLOC1_40103.1	1227	8e-25	386 - 445	100	60 / 60	minus
Harvest35	U35_23879	458	3e-25	311 - 370	100	60 / 60	plus

Contig Sequence (458 bp)

>U35_23879 458 Hv_44K_v2
AAAAAAACAAGGGGAGGTCACAGGTGACAGGGCCTCCTCAGCAGGCAGCTCGCTCGCGCA
TCTCTGCTTGAGCCCGTCCCATCGCGCGCCTGATGCGCCGCAAGAAGCACTTGGACCGCG
CTGGCGGCGGCGGCGGCGGCGGCACGGAGCTCTTCATCTGCTTCACCTCCCGCCCCTCCG
CCTCCGGCCTCCGCCCCTCCGCCTCCTCCAAGGCATTCAGCCCCGGACGCACCGGAACCG
CCGGAGCAGCAGGAGGGAACGGCTCTGGTGCTGGTGGTGCGGAAGCGGCACCGGCAGCGC
TGCTGCGCCCGTCGCTGAGCAGGAGGCTGAGGAACAGCGGGAGCCTCAAGGGCGGCCAGT
CGCCCATGTTCCCGCCGGGCACGGCGTCGGGGGGCCGGCGCGGGCGGAGCGGGATGGAGC
CCGCCGAGCCGTCCTCGCCCAAGGTCACCTGCATCGGC

Homology of Contig U35_23879 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None