barSeed - Barley Seed Development Database

Probe CUST_29827_PI390587928

Source Contig U35_35851

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29827_PI390587928	Hv_44K_v2	CTGTAGGTTCTGTTCTATATGCACAACTTCCTATTTCAGAATAACCTTCTGATGTATACA	39	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360635	1763	3e-21	1097 - 1157	97	59 / 61	plus	ABC15884
Harvest35	U35_35851	471	3e-25	40 - 99	100	60 / 60	minus

Contig Sequence (471 bp)

>U35_35851 471 Hv_44K_v2
GGGCGAATTGGGCCCTTCAGAAAATGCTCGAGCGGCCGCTGTATACATCAGAAGGTTATT
CTGAAATAGGAAGTTGTGCATATAGAACAGAACCTACAGATGCAAAAAGACGGATATGTT
TTATTTACAACTCCTGCAATAATATTAATTTGCTAATAGAATATTGCTCAAACAGTAAAG
GATATAGTTGGCAAGTCGGGCCCAAGAGAAATCTTATTCATGGCAACCCCAAGACCACCA
GACTGTGCCTCCACAATTGCACTGACCACCTCCTGTGCAAAGTACAGTTCATATCACAGG
TTTGCAGTTCCTTCTACAGAAGTTGCAACATCTCCCGGGACTAGATACCATCGGCCAGTA
AAACTGCAGTTACCTGTGTTGCTTTATCCATCTCGTAGAGCGAATTACTCTCAGTAGTCC
GCACAGACTGAGTGGCTATTGTAGGCTGGAGAACTTTTACATCTCTTGTTT

Homology of Contig U35_35851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None