- Probe CUST_29812_PI390587928
- Source Contig U35_23882
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_29812_PI390587928 | Hv_44K_v2 | AGGTTGCTGTGTTCGGGCAGCCGCAGTGGGGTACTAGCCGGAGACGATGATGATGATGGG | 117 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK353813 | 1787 | 2e-24 | 121 - 180 | 100 | 60 / 60 | plus | ABC39095 |
MLOC | MLOC_32815.1 | 446 | 7e-23 | 107 - 166 | 98 | 59 / 60 | minus | None |
JLOC1 | JLOC1_21350.1 | 837 | 4e-23 | 136 - 195 | 98 | 59 / 60 | plus | |
Harvest35 | U35_23882 | 448 | 3e-25 | 118 - 177 | 100 | 60 / 60 | plus |
Contig Sequence (448 bp)
>U35_23882 448 Hv_44K_v2 GTGCTCCCCTCCACTCACCACCTCTCTCCCCTCACAAGAGCATCGCCATTCTCAACCCAC CGCACCACGTCGATCGCCAAGGTCCGTGCCTCACAACCACAGCGTAGCTAGCTAGCTAGG TTGCTGTGTTCGGGCAGCCGCAGTGGGGTACTAGCCGGAGACGATGATGATGATGGGCGG TCGCGCGGGGGCCGGCGGCGTGGGGGCAGGCGGGGGGCGGTGCCCGTTCACGGCGACGCA GTGGCAGGAGCTGGAGCACCAGGCGCTCATCTACAAGTACATGGCCTCCGGCGTGCCTAT CCCCTCCGACCTCCTCCTCCCGCTCCGCCGCAGCTTCCTCCTCGACTCCGCCCTCGCCAC CTCCCCCTCCCTCGCCTTCCCTCCGCAGGCCGCACTGGGCTGGGGTTGCTTCGGGATGGG GTTCGGCCGGAAGCCGGAGGACCCGGAG
Homology of Contig U35_23882 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |