barSeed - Barley Seed Development Database

Probe CUST_29806_PI390587928

Source Contig U35_23889

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29806_PI390587928	Hv_44K_v2	ATCTTGGATGCAAATGAAGGGTACACAGCAAACCAAGCAATTGAAGTTCTTGACAGACTA	874	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.559	1.230	2.122	2.068	0.813	0.642
Raw	13.564	41.207	68.596	106.712	14.211	12.714

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366083	1766	2e-24	874 - 933	100	60 / 60	plus	ABC15730
MLOC	MLOC_62491.1	2104	2e-24	1231 - 1290	100	60 / 60	minus	ABC15730
MLOC	MLOC_62491.2	2139	2e-24	887 - 946	100	60 / 60	minus	ABC15730
JLOC1	JLOC1_40890.2	2128	8e-25	1160 - 1219	100	60 / 60	plus
JLOC1	JLOC1_40890.1	2123	8e-25	1155 - 1214	100	60 / 60	plus
Harvest21	ABC23590	775	3e-25	716 - 775	100	60 / 60	plus
Harvest35	U35_23889	934	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_23889 934 Hv_44K_v2
CTGCAGCTCGATCCTCCATCGGCCGGCCTCCCGCGAATCTCCATCGCTCGTCAACGTCCC
ACCGCTGCCGGCCATGGACGGCTCCATCTCCATCTCCTCCTCCACCCCACTCCGCTTGGC
CCACAACCCTTCCACCCCAAGGCCCCTCCTCAGCCCCACCCCACGACTCACCCCTGCCAG
CGCCGGCCGCCAGCCATCCGCCCGCCTCCGCGCCATCTCGCCGTCGCCGTCGCCGTCCCC
CACGACCCCGCAGCAGCGGCAGCAGGAGCCGATGGAGGCCTTCGGCTTCGACGCGCTCAA
GGAGACCTTCTCGGTGGACGTGGCGGCGGCCGAGGCGCGCCCGCTCAACGTGCCGCTCGC
CGCGCCCTTCACCATCGCCTCCTCGCGCCTCGACGCCGTCTCCAACGTCGCCGTGCGGGT
CGAGCTCTCCAGCGGCGCCGTCGGCTGGGGCGAGGCCCCCGTGCTCCCCTCCGTCACCGC
CGAGGACCAGCCCGCCGCGCTCGCCGCCGTCTCCCGCGCGTGCGCGCTGCTCGTGGCCGC
ACGGAGCGCGCCCCTCGGCGCCGTGCTCCAGGACGTCGCCGACGCGCTCCCCGGACACGC
CTTCGCATCGGCCAGGGCAGGAGTGGAGATGGCAGTGATTGACGCGGTAGCTAACAGCAT
CCGCATACCCTTGTGGAGATTATTTGGGGGAGCATCAAACACCGTGACAACAGACATCAC
GATTCCAATCGTGACCCCAAACGAAGCCGCTCAATTGGCCGCAAAATATCGTGGACAAGG
GTTTCAAACTCTGAAGCTCAAAGTAGGGAAAAACTTGAACTCGGACATAGAAGTTCTGAA
GGCTATACGGCTTGTGCATCCCGACTGCTCGTTTATCTTGGATGCAAATGAAGGGTACAC
AGCAAACCAAGCAATTGAAGTTCTTGACAGACTA

Homology of Contig U35_23889 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04630.1	447	7e-114	protein\|muconate cycloisomerase, putative, expressed
Brachypodium v1_2	Bradi2g02560.2	443	1e-116
Arabidopsis v10	AT3G18270.1	410	1e-75	\| Symbols: CYP77A5P \| cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene \| chr3:6262010-6264025 FORWARD LENGTH=410