barSeed - Barley Seed Development Database

Probe CUST_29801_PI390587928

Source Contig U35_35868

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29801_PI390587928	Hv_44K_v2	GAAAACATACGTGGACGTGCTGGCTGTCTGTTTGCACAAGAAATTTGATGTTTGGTGAAG	637	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.957	1.602	1.074	0.780	0.290	0.297
Raw	788.724	1015.592	610.417	693.533	92.649	101.590

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13551.1	2660	7e-23	40 - 99	98	59 / 60	minus	None
MLOC	MLOC_13551.2	2077	7e-23	40 - 99	98	59 / 60	minus	None
Harvest35	U35_35868	701	3e-25	638 - 697	100	60 / 60	plus

Contig Sequence (701 bp)

>U35_35868 701 Hv_44K_v2
GGCGAATTGGGCCCTTCAGAAGATGCTCGAGCGGCCGCTGGCTGCTTGAAGACTCTTTTA
CTCGACATGTGGTGCAGGGCTACTGACCTGAATGCACTAGTTCGCATTCTGCAGCACACG
CCAGTTCTTGAAAAGCTCACTCTCCAGCTTCGTAGTGACTGGAATTTGCGAAGCGCAGCC
CGAGGTGAAAGAAAGCATGTCCGAATAGAGCAATCATTTTCATGTGTGCATCTTAAGGAA
GTCAGCATTGAATGTGAAGAGAAACTAAGGGTCAAGGATAAGGTCAACCAAATTGTGAAG
ATCATGACTAGAAATGGCGTACTTACTGAGAACATCAGTTTCAAGAAGATTCCAAGGCCA
GAAGTCTATCGTCTCGTGTGTGTATCACCTAGGGCCTTTGATCCCAACTGGTCCGGTGAA
GACTAAATTGGTGTGTTGGACCAGTGATAGAAGATGTTTCAAGCCTTTTGTGTTGTAACG
GCGGCCTGTTGCTGGCCGTTTGTTGCAACTCGGCAAACAGTTTCCAGTTGGGTAGTTTTT
TTTTCTAAGTTAAGCTGGGCAGTATGTAAAGATGTCACTAGTACTGATATCTCTTGTCAG
TAATGAAAATCATGTAGTCAGGAGCTTGTTGCACTTTGAAAACATACGTGGACGTGCTGG
CTGTCTGTTTGCACAAGAAATTTGATGTTTGGTGAAGCTGT

Homology of Contig U35_35868 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None