barSeed - Barley Seed Development Database

Probe CUST_29794_PI390587928

Source Contig U35_47847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29794_PI390587928	Hv_44K_v2	TCGGCGAGCGTGTGTATTAAAATCACGGCGCTGTGCCCGATCGCGCTGCTGGAGAAGACG	111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67213.1	2173	7e-23	1029 - 1088	98	59 / 60	plus	ABC00068
MLOC	MLOC_67213.3	1459	9e-22	428 - 485	98	57 / 58	plus	ABC00068
JLOC1	JLOC1_44348.1	2335	4e-23	1023 - 1082	98	59 / 60	plus
JLOC1	JLOC1_44348.2	2790	5e-22	1480 - 1537	98	57 / 58	plus
Harvest21	ABC49346	171	3e-25	112 - 171	100	60 / 60	plus
Harvest35	U35_47847	171	3e-25	112 - 171	100	60 / 60	plus

Contig Sequence (171 bp)

>U35_47847 171 Hv_44K_v2
GGCGGATTCCTCGACATCGGATTCGAGGACGCCGAGGACGGCGCCGCCTGCGACCGCAAC
GTCGCCGGCTTCCTCGCCGCCGTCGACGTCGCCGCCGCGCTGCCGCCGGGATCGGCGAGC
GTGTGTATTAAAATCACGGCGCTGTGCCCGATCGCGCTGCTGGAGAAGACG

Homology of Contig U35_47847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None