barSeed - Barley Seed Development Database

Probe CUST_29791_PI390587928

Source Contig U35_23892

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29791_PI390587928	Hv_44K_v2	AAGAAATGACATTGCGGCGAGCCAGCTCTCAAGCGTTAAATCAACCAATGTTGTGTCGTT	563	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.151	0.181	0.752	1.751	1.335	1.596
Raw	800.086	1490.648	5525.213	19447.847	5345.970	6928.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57184.1	1177	2e-24	93 - 152	100	60 / 60	minus	None
Harvest21	ABC20185	641	3e-25	564 - 623	100	60 / 60	plus
Harvest35	U35_23892	641	3e-25	564 - 623	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_23892 641 Hv_44K_v2
GACCGGAGTGCTGGATCTGGGACAGCCCGACGAGCAACCGCCGCCGCCCGAGATGGAGCC
GGAGAATCCGGATGAGCACGAGCACGAGCACACGCACATGGAGAGGAGCATGTCCGAGGC
GGCCGTCGAGGCAGAGCTGCCGCGGCTGCCGGCGCGGCAGCGGAAGTCGGCCCGCGACAA
ATCGGCGTTCGCGTACATCGTGGCCGAGAAGGACAACGAGGTGGTGGAGGCGCGCAGGCC
GGCGACGACGAGGGACGCGCATCGCCGCCACCACCTGGCGACGAAGCTAGAGGAGCCGGC
CCCGGAGGAGGAGACTGAGGAAGCCGTCGGCGAGGTGGACGCGCGCGCGGACGAGTTCAT
CAACAAGTTCCACCACCAGCTGAAGCTGCAGCGCGCCGACTCCTTCATGCGCTCCCGGGG
TACGCTCCACCGCCGCCAGAGGCGCGCTAGGTTGTCGTCTCCCGCAGCCGCGGGTGCTCC
GTGATGCTCCACGGAGCTTCCCGCGCTAGCCTAGTGGATGAATGAATAAGAAGGAAACAA
AACCTGGCGTTCGAATCTTTGCCAAGAAATGACATTGCGGCGAGCCAGCTCTCAAGCGTT
AAATCAACCAATGTTGTGTCGTTCGGCCCATGCTATGCGCC

Homology of Contig U35_23892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None