barSeed - Barley Seed Development Database

Probe CUST_29790_PI390587928

Source Contig U35_23894

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29790_PI390587928	Hv_44K_v2	TCCCTGGACTACAGCGCGACCCACATCCGGGTGATCACCAAGATGTCCAACGTCTCGTGC	603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57397.1	3038	2e-24	2270 - 2329	100	60 / 60	plus	ABC20270
JLOC1	JLOC1_37192.1	2888	8e-25	2084 - 2143	100	60 / 60	plus
Harvest21	ABC18973	669	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_23894	670	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_23894 670 Hv_44K_v2
GCGAACACGGCAGCGAGCGGGGAGGAGCTCGTGGCGGACAGCCACCTCCTCCCGGCCGTG
GCGGTGGGGAAGTCGACCGGTGACAAGATACGGGACTACGCCCAAAGCGGTGGCCGGCCG
ATGGCAATGCTGAGCTTCGGCGGCACGGCCCTCGGCATCCGGCCGTCGCCCGTCGTGGCG
GCGTTCAGCTCCCGCGGGCCCAACACAGTCGTGCCCGACATCCTGAAGCCGGACATGATA
GGTCCGGGCGTGAACATCCTGGCCGGGTGGTCCGGCGTCAAAGGGCCGACAGGGCTCGCC
AAGGACAGCCGCCGGACTAGCTTCAACATCATCTCCGGGACATCGATGTCGTGCCCACAC
ATCAGCGGACTCGCCGCGCTGCTCAAGGCGGCGCACCCAAACTGGAGCCCTGCGGCCATC
AAGTCGGCGCTGATGACCACCACATACACCATGGACAACACCAACTCCTCGCTCCGGGAC
GCCGCCGGGAGCTCACCGGCGACCCCGTTCGGCTTCGGCGCAGGCCATGTCGACCCACAG
AAGGCGCTCTCCCCGGGCCTCGTGTACGACATCTCCACCAACGACTACGCCGCCTTCCTC
TGCTCCCTGGACTACAGCGCGACCCACATCCGGGTGATCACCAAGATGTCCAACGTCTCG
TGCCCGCCGA

Homology of Contig U35_23894 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g25450.1	774	2e-126	protein\|OsSub60 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi4g41420.1	770	3e-130
Arabidopsis v10	AT2G05920.1	754	9e-110	Subtilase family protein \| chr2:2269831-2272207 REVERSE LENGTH=754