barSeed - Barley Seed Development Database

Probe CUST_29752_PI390587928

Source Contig U35_47871

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29752_PI390587928	Hv_44K_v2	TATCAGATAATGTTGCTACAGATTGTGCGAATCGTCCACCCACTTCAGAGGAGCAAAGGA	409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369813	1110	3e-22	382 - 440	98	59 / 60	plus	None
MLOC	MLOC_27055.1	254	3e-22	38 - 96	98	59 / 60	plus	None
Harvest21	ABC49380	483	3e-25	410 - 469	100	60 / 60	plus
Harvest21	ABC35725	447	2e-21	373 - 431	97	58 / 60	plus
Harvest35	U35_47871	483	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_39549	447	2e-21	373 - 431	97	58 / 60	plus

Contig Sequence (483 bp)

>U35_47871 483 Hv_44K_v2
CCGGCTCGCACGCTCGCCGCCACGGCGCCACCGACACCTCCCCCGCCCCGCCGGCCGCCG
CCCGGCGGGCCAGACGCAGACGGCATGGATTGCCTGAGGCGGGCGAACCCGTTCCGCGCG
TGCGCGGGGCTGCGGGTTCTGGGGTACCTCATGCTGGCGCTCGTCGCCGCCATCGTCGCC
GCCTCCTACTACGCCGTCGTCGTCTACGCCTGGGGCCCACTGCTCCTACGCGGGGGCAGC
GGAGGCTCCGTAGCCGCCGCCGCTCTCGTCCTCGCCGCCTTCCACCTCCTTCTTATAATG
ATGCTATGGTGCTACTTTATGGTTGTTTTTACGAATCCTGGAGCTGTACCAGGAAACTGG
AGACATGCTGCTGAAGAGGATGGTATGTATCCGAACAACAGTAGCACCATATCAGATAAT
GTTGCTACAGATTGTGCGAATCGTCCACCCACTTCAGAGGAGCAAAGGACATGCGCCTAG
ATA

Homology of Contig U35_47871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None