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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29751_PI390587928Hv_44K_v2CGAAATAGACAACAAGTACCGTCGCCTAACTTTGACGTACAAAATAAGGATGACATTCCT603GeneList: darkorange2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2851.0681.5401.1390.5040.234
Raw 57.79570.21393.409104.10317.0668.629



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_37108.123052e-24858 - 91710060 / 60plus ABC17268 ABC42123
MLOCMLOC_37108.222292e-24858 - 91710060 / 60plus ABC17268 ABC42123
MLOCMLOC_37108.323602e-24847 - 90610060 / 60plus ABC17268 ABC42123
JLOC1JLOC1_23989.416878e-25840 - 89910060 / 60plus
JLOC1JLOC1_23989.323278e-25840 - 89910060 / 60plus
JLOC1JLOC1_23989.217308e-25845 - 90410060 / 60plus
JLOC1JLOC1_23989.123708e-25845 - 90410060 / 60plus
Harvest21ABC493816663e-25604 - 66310060 / 60plus
Harvest35U35_478726663e-25604 - 66310060 / 60plus



Contig Sequence (666 bp)

>U35_47872 666 Hv_44K_v2
GGACGACGCGGCCGCAGCAGCAAGAGATCGCGCCACGCCACGCCCTCCTCGGACTCCGAT
TCTTCCCCTTCCTCGGCCTCCTCCTCTCCGAGCCGCAGCCCTGGGCCCCGGAATCGCAGC
GGCAGCAAGCCCGAGAAGTCGTCCTCGTCTCGTCGCCGCCGCCATCACCGCAAGAGCAGC
GGCCGCTCACGCAGTTCCCGTGACGACGATAGGCGTCGTCACCGGCGGAGGCGCCGGGAT
GAGCGTGCCCGTCACGGCAGCGATGCCAGCGACCTGTCAGGGTCAGGCTCAGATGATTCA
GGTTGGATGGAGGAGGCGCAGGAAATCGTCCGTGGCATTCTCAGTGAGTTCCCTGCCATC
ACCAGCGAGCTTCGTCAGCTTCTCCAAATGATAGATAGTGGTGAAGGCATTGATATTTCT
GGTATTTCTGACAAGCCATTGGTAAAGCGGTTGAAGAAACTTTTCAGATCCCTGAAATTG
AAAGAAAGTGCAAATGGAGCTTACTTGCTGGCACCAAAAGGTGTTCCTACCCTTGATGTT
GTTGGGCCAGTATTAGAAGGAAGCGCCAAACTTGGAAATGATCCAAATGAAACTGTGGCA
TCACGAAATAGACAACAAGTACCGTCGCCTAACTTTGACGTACAAAATAAGGATGACATT
CCTCCT



Homology of Contig U35_47872 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None