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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29750_PI390587928Hv_44K_v2CTAAATAACGGCTTACGGTTTGCCGACCGCTCCTAGTATATTTCCCATTTTATGCAAAAT485GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 5.5306.3231.1740.6990.2570.490
Raw 753.1341387.066215.590221.31226.25256.173



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_18031.230843e-212631 - 26909758 / 60plus ABC02631 ABC48478
MLOCMLOC_18031.119493e-211588 - 16479758 / 60plus ABC02631 ABC48478
JLOC1JLOC1_12462.121162e-211600 - 16599758 / 60plus
Harvest21ABC493835453e-25486 - 54510060 / 60plus
Harvest21ABC484784726e-22280 - 3399758 / 60minusABC48478
Harvest21ABC0263110616e-22801 - 8609758 / 60plusABC02631
Harvest35U35_478745453e-25486 - 54510060 / 60plus
Harvest35U35_59918696e-221530 - 15899758 / 60plus



Contig Sequence (545 bp)

>U35_47874 545 Hv_44K_v2
GCGGGAAGAAGCAGGGCCGAGACGACCGCAAGGCGTCGTCGCAGGTCCGCAGCGACCGCA
AGTCGGGCTCCGGGATGAGCGGCGATGCCAAGAAGGGCGGCCGCGGCGGCAAGTTCACCT
NGGGAGGACGACAATCCGTTCGCCGTACCTGCGTGTGCCGGCCACGGAGGGGACGCTCCA
CAACCTCGAGTGCTACCTGCACGGGGTGGCCGGGGAGCAGGGCAGTGCCGGAGGGTTCAA
GCTCGAGGTGGACCGTGACATAGCGCTGGTGAACAAGGGTGCCGATGCGCTCGCGGACGA
GCACCCGGTGCCGGCGAGCTGGTGGGTGCCGAAGCACAAGTTCATGGTCAAGGGGGGAGA
TGGGCGATGGACGCTCCAGGACTTCAAGCACATCTAAGTTAAGTTACTCGCATCGGCCAT
TCACTAGGAGGAGAGTGGGCGTTGATGTGATTCACGGCGCTGTGCTCGTTGCCAAGACCG
AGGTTCTAAATAACGGCTTACGGTTTGCCGACCGCTCCTAGTATATTTCCCATTTTATGC
AAAAT



Homology of Contig U35_47874 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None