barSeed - Barley Seed Development Database

Probe CUST_29744_PI390587928

Source Contig U35_47882

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29744_PI390587928	Hv_44K_v2	TGCCATGGCATGTTACCGTCAGATTCCAATAATAATAAGAAGAATAAAAGCCTTCCATCT	1968	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_244.1	606	2e-24	523 - 582	100	60 / 60	plus	ABC01611 ABC01614 ABC31774 ABC49394
JLOC1	JLOC1_168.1	943	8e-25	657 - 716	100	60 / 60	plus
Harvest21	ABC49394	2028	3e-25	1969 - 2028	100	60 / 60	plus	ABC49394
Harvest21	ABC01614	737	3e-25	523 - 582	100	60 / 60	plus	ABC01614
Harvest21	ABC31774	435	2e-21	22 - 77	98	55 / 56	minus	ABC31774
Harvest35	U35_47882	2028	3e-25	1969 - 2028	100	60 / 60	plus
Harvest35	U35_14467	760	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (2028 bp)

>U35_47882 2028 Hv_44K_v2
CGCAGACGAGATCGACAGAGGCGAAGCCGCCGGAGAGGAGGAAGAAGAAGCTCCAGACGA
GGCGAGGAGAGGAGAGGGATCGGCGTCGTGGCGATGGATCGGGCCCGCGGCTCCGCGCTG
CTGCTCGGCGTCCTGCTCGCAGGTTCGCTGTTTGCACTTTGTGCCGCGAAGGAGGAGGCC
AAGAAGCTCGGTACCGTGATCGGTATCGATCTCGGTACCACCTACTCATGTGTCGGTGTG
TACAAGAACGGTCATGTCGAGATTATCGCCAATGACCAGGGTAACCGTATCACGCCCTCA
TGGGTTGGGTTCACCGATGGGGAGAGGCTCATCGGTGAGGCTGCCAAGAACCAGGCGGCG
GTCAACCCCGAGAGGACCGTTTTTGACGTCAAGCGTCTCATTGGAAGAAAGTTTGAGGAC
AAGGAGGTGCAGAGGGACATGAGACTTGTCCCCTACAAGATTGTCAACAAGGAGGGCAAG
CCTTACATTCAGGTCAAGATCAAGGATGGGGAGACCAAGGTCTTCAGCCCTGAGGAGGTC
AGTGCTATGATTCTTGGAAAGATGAAGGAGACTGCTGAGGCATACCTTGGCAAGAAGATC
AATGACGCCGTCGTCACTGTTCCTGCGTACTTCAATGACGCGCAGAGGCAGGCGACCAAG
GATGCTGGTGTGATTGCTGGCCTCAATGTGGCTAGGATCATCAATGAGCCCACTGCTGCT
GCTATTGCCTACGGTTTGGACAAGAGGGGTGGTGAGAAGAACATCCTGGTGTTTGACCTT
GGTGGTGGTACTTTTGATGTCAGTATCTTGACCATTGACAATGGTGTCTTTGAGGTGTTG
GCCACCAACGGTGACACCCATCTTGGAGGTGAGGACTTTGACCACAGAATCATGGATTAC
TTCATCAAGTTGATCAAGAAGAAGCACGGCAAGGACATCAGCAAGGACAACCGTGCTCTT
GGAAAGCTGAGGAGGGAAGCTGAGCGTGCCAAGAGAGCCCTCAGCAACCAGCACCAGGTC
CGCGTTGAGATCGAGTCCCTCTTTGACGGGACTGATTTCTCGGAGCCACTGACCCGTGCG
AGGTTCGAGGAGCTGAACAACGATCTTTTCCGCAAGACCATGGGACCGGTGAAGAAGGCC
ATGGATGACGCTGGCCTCGAGAAGACCCAGATCCATGAGATTGTTCTTGTTGGTGGAAGC
ACCAGGATTCCCAAGGTCCAGCAGCTCCTCAGGGACTACTTCGACGGCAAGGAGCCGAAC
AAGGGTGTGAACCCTGATGAGGCTGTTGCCTTCGGAGCTGCAGTGCAGGGAAGCATCTTG
AGCGGTGAGGGCGGTGACGAGACCAAAGATATCCTTCTCCTTGATGTGGCGCCCCTCACC
CTCGGTATCGAGACTGTTGGAGGAGTCATGACCAAGCTGATCCCCAGGAACACTGTCATC
CCCACCAAGAAGTCGCAGGTTTTCACCACCTACCAGGACCAGCAGACCACCGTCTCCATC
CAGGTCTTTGAGGGTGAGCGTAGCATGACCAAGGACTGCCGTCTTCTCGGCAAGTTTGAC
CTTTCTGGCATTCCCGCAGCTCCAAGGGGCACTCCACAGATTGAGGTGACCTTCGAGGTT
GACGCCAACGGTATCCTGAACGTGAAGGCGGAGGACAAGGGCACGGGCAAGTCTGAGAAG
ATCACCATCACGAACGAGAAGGGGCGCCTGAGCCAGGAGGAGATCGACCGGATGGTCAAG
GAGGCGGAGGAGTTTGCCGAGGAGGACAAGAAGGTGAAGGAGCGCATCGACGCCCGGAAC
CAGCTGGAGACGTACGTGTACAACATGAAGAACACGGTGGGCGACAAGGACAAGCTTGCG
GACAAGCTGGAGAGCGAGGAGAAGGAGAAGATGGAGGGATCATGGCCGAATAATAACTAA
ATAATAAAGTGCGCGCGTGCCTGTATGCTGAGCTAGTAGAATGTAATCTGCCATGGCATG
TTACCGTCAGATTCCAATAATAATAAGAAGAATAAAAGCCTTCCATCT

Homology of Contig U35_47882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g02410.1	666	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi3g01477.1	666
Arabidopsis v10	AT5G28540.1	669	\| Symbols: BIP1 \| heat shock protein 70 (Hsp 70) family protein \| chr5:10540665-10543274 REVERSE LENGTH=669