barSeed - Barley Seed Development Database

Probe CUST_29737_PI390587928

Source Contig U35_47893

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29737_PI390587928	Hv_44K_v2	AGTGTTTGTTTATACGGAGTACATTGTAACTTGGAGAGCGTTATCTTCTTTACAATTCAG	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74679.2	1652	3e-22	866 - 924	98	59 / 60	plus	ABC04437 ABC04438
Harvest21	ABC49418	680	3e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC04438	926	2e-21	1 - 56	98	56 / 57	minus	ABC04438
Harvest35	U35_47893	680	3e-25	17 - 76	100	60 / 60	minus
Harvest35	U35_16123	1156	2e-21	1101 - 1156	98	56 / 57	plus

Contig Sequence (680 bp)

>U35_47893 680 Hv_44K_v2
TGGAACTGAATTTATACTGAATTGTAAAGAAGATAACGCTCTCCAAGTTACAATGTACTC
CGTATAAACAAACACTTGTTGTCGAGGTTATGCAGTGCATATGTGTACATGGACCTTTTG
ACTCTACTGACAACAATCTAACAAAAAATTGTGTCTCCGTTTCCCCTTTGGTTGTAGTAG
TTCCAATCTGATTTGCAGGTTGGTTTCCCTCTTGTGCACAGCACACAGTACAGAAATTTC
TCCTGTGAAATTCAAAAGGAGTTGACACAACTACAGATGCTGGAACCAAGTTATGTATTT
TAACATTTCACCGGATAATAATGATACAGAAGAAGATGTATAGAGACGGCAGAAAAAAGA
GGACCTAAGCATCAGACTTCGAGGTTAACGGAGGGCATCTCCAACTCGGAGGTGATCTCC
GCGATCTGCTTGCGGACGCTCATGTCGATGAAGTTGGAGCTGTCGCGGCCGTACTGCACG
GTGAATCCGGCGATGAGCTCCGGGTCGAGGCGGGTCTTGATCCGGACGTTGGCGGCGCCG
GTGATGTTCTGCACGTGCGTGGCGATCTGCGCGAGGTCCTGCGACTCGAGCTGCACGACG
GAGGTGACGACGGCCTCCTCGGTGCCGGTGAGCGCGTTGTAGGCGGTCTCGAACTCGCGC
ACGATCTGCGGCATCAGGCC

Homology of Contig U35_47893 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59130.1	248	3e-53
Arabidopsis v10	None