barSeed - Barley Seed Development Database

Probe CUST_29736_PI390587928

Source Contig U35_47895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29736_PI390587928	Hv_44K_v2	GTATACTACCGTTCTCTGAGTGGTCCTCCGTATTCAAGGACACTTGACTGAATTTGTGAA	293	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59092.5	1462	2e-24	303 - 362	100	60 / 60	minus	ABC12931
Harvest21	ABC49427	652	3e-25	294 - 353	100	60 / 60	minus
Harvest35	U35_47895	652	3e-25	294 - 353	100	60 / 60	minus

Contig Sequence (652 bp)

>U35_47895 652 Hv_44K_v2
AATGTATACTATAATGTGAATGAACTCGCTAATATACTTACAATTACAATTTATACACCT
ACCTGATTCCGAAACGTAATACAATTAATTTCGCTAACCAGGTTCAAAATTGGGGAGCTG
AATTATACAACGGGGACTACAGGGAATAAATATATCATTATCATTGCTTCGTACTATGCT
CTCTTCGCAACCTTTCGTCTTTTTTCGACAACCCATTGATCTGATGCTCAAGCTGATTAT
TTCTCAGCTTTAATCTCTGCACTTCCTCAGCGAGTTCTGTGACACTGCAAATTTTCACAA
ATTCAGTCAAGTGTCCTTGAATACGGAGGACCACTCAGAGAACGGTAGTATACCTTCGCT
GTAGTTGGACGACATATGACTCCAATCCCTTTTCTCTAGCAAGCGATCCAGATGACTGAA
CATATATAAGCACTTTGTTAAAACAATCACAAAACAGTAATTGACCTTCAAAGTTCACAT
GTCTTGAGGTAAAATGTCAAAAAACATATGGAAGACACTCCATCGGACACACCTGAGATG
AACCAACTGTACTTGCATCGGAAGCATCAGATGTTTCCTCAATTGAAGAAATCAATCTAC
TTAGCACTTCCTTCTGCATACTATTTTGCTGCATCAAGAATTGTAGTGTCGG

Homology of Contig U35_47895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None