barSeed - Barley Seed Development Database

Probe CUST_29732_PI390587928

Source Contig U35_6801

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29732_PI390587928	Hv_44K_v2	AATGTTAATGACTGTCCGGAACTTCTACACTTGGTAAATGTTAATCCTCTCCTATATACT	1066	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70550.1	867	7e-23	537 - 596	98	59 / 60	plus	ABC15046
JLOC1	JLOC1_46823.1	3642	4e-23	3514 - 3573	98	59 / 60	plus
Harvest21	ABC26837	623	1e-23	518 - 577	98	59 / 60	plus
Harvest35	U35_6801	1172	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1172 bp)

>U35_6801 1172 Hv_44K_v2
GGCGGCGCAGCACGTCGAGCACGCTGCCAAGAACTTGATCAGCAACGGTAACGGCCATGG
CAACGGCGCTGCCATGCAAGTGAAGGCGAGCAACGGCGCCCCGCCTACCGTGGCTATGTT
CCCCAGCTCTGCCCAAGCCGCCGGCAACGGCGCCAACAGCGGCACGGCGACGAACAAACT
GGAGCTGAAGCAAGAAGGCGTCGCCAAGGAGACGGCACCGGTGGTGCAGCCGGCCGTGGC
CATGAATCACAGCTACGGCCGCAACGACAGAAGGGACGTCTACGACCTGGACAGCGACAG
CATGGACGAGGACGACGAGGACGACTTCGACGACGATGACGATGAGGAAGACGACGACGT
CCCCGGCGGCCGCAACATCAACATGCCGCCGGTGCTGCATCAGTACGACGCCCACTTCCT
CCAAAGGCAGCATCAGCATCAGCAGCAGCAGCAACAGAACCACAACCACAACCACAACGT
AGTCAGGCCCAACGCGGCGAACGGCAGCGGCAACCCGCCGGCGGGCAACGCCACACCAAC
ATCGGCGGCGGGGGCGACAAACGGGGCGCCATTCCTGGCCATGGTCCAGTGACGATGGAT
CGAGCAAGACGACGCTAGCGCTACAAACCAAGAAGGCCCAGGTGGTACCGATCTCGATCT
CTCACTCATGTGCCCATACGGATCCACATTTGCACATGCCCACTTGATGATGGATTGATA
CCCCCTGCCTGCCGCTGCGTGCTAGGTAAAAAACCCAGACCTGAAAACCCTACTACACAG
AATTTACTTCTGCTCCTTCCAATCCAACAACCCTAAATTATTTCCATTATTGTTTATTAC
TATTATTCCTGGTGCACATACATATATATATATATGGGCGGCGTATACATGATGTACATG
TCACATATCTTCACCACACTGTACGTAGATGCATGGTAAATTAAACGGCGTGGGGATTTC
CTTTTTTTTTCCACTTTACTTTGAGGATACTTCTGGAGCTACCATTTTTGTCTAAAAGAA
GTTACTGTCCCGTATGTGTCATGTAAGAATTTTTGTGCTCTTGTTAAATGTTAATGACTG
TCCGGAACTTCTACACTTGGTAAATGTTAATCCTCTCCTATATACTATATATATATATGT
TGCAATTCATGTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None