barSeed - Barley Seed Development Database

Probe CUST_29728_PI390587928

Source Contig U35_6805

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29728_PI390587928	Hv_44K_v2	GTTGAAAAACCCGCACAAACTTTGTCAGAAGAAAATGTTGCATCTTGCTCTGTTGATGGC	317	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60457.1	1985	2e-24	1412 - 1471	100	60 / 60	plus	ABC18500
JLOC1	JLOC1_39423.1	1917	8e-25	1379 - 1438	100	60 / 60	plus
Harvest21	ABC35536	656	3e-25	318 - 377	100	60 / 60	plus
Harvest21	ABC18500	621	1e-23	497 - 556	98	59 / 60	minus	ABC18500
Harvest35	U35_6805	867	3e-25	318 - 377	100	60 / 60	plus

Contig Sequence (867 bp)

>U35_6805 867 Hv_44K_v2
GATAGGATCCGCGCAGCACAGCTACTAAGAACTGGCAGGGTTGGTGAAGGTGTAGCATAC
AAACATTTTGTTAAGCGGCTAGGGACCCAGAATGTCAGGTGGGTGAATGCAGACACCGAA
ACCGGACTGCCCTATGATATTATCATCACCCGTGGAGATAATCGGATAGAGTATGTCGAG
GTGAAGGCAACCACAACTTCAAACAAAGACTGGTTCTACATTACGGCAAGGGAATGGCAG
TTTGCATTGGAAAAAGGGGACGATTTTAGCATCGCCCGTGTCATGGTGTCGGGCGAAAAG
ATGGCAAATATCAAAATGTTGAAAAACCCGCACAAACTTTGTCAGAAGAAAATGTTGCAT
CTTGCTCTGTTGATGGCCCGCCGGCAGTGAAGCAAGCATTGACGGACTATCTGCATGAGA
TTGAACTGATTGCGGGTACTTGTCGGCGGTAATCACTGAGATCTCCATCTCCGCTGAACC
CTTAATAGGAGAGACAAGCTGCGTTGGCTGCTCCGACCTGTCAGTCCATGATGCCTCTCT
TCTGTGTGGAGAATGAGATGAGATGAGTCGAGGTTGCGAGATTATGAGGCAGCTCCAGAT
CCCTGTGTGCATGTAGTGATGTCTTCTGAGGCAATGATCTTGGTGATGGGTCTCTGGATC
CGTGTTACACATGACATCGTCGTCTCTGTGCCTGGAGCCTCTGCTCCACTGACTTGTAAA
CGGTTGTAATAGTGGCTACATAACCATAACTGTTGGTTTGTTTGATTGGTTACAACGAAA
CTGTATTTGATCATAACAATAGTCAAGAATTGAAACACCATTGCAATAGTAAAGAAGTTA
AACATCGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_6805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g04980.1	2679	2e-53
Arabidopsis v10	None