barSeed - Barley Seed Development Database

Probe CUST_29723_PI390587928

Source Contig U35_5478

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29723_PI390587928	Hv_44K_v2	TGTCTGCAGGTAGTTGCACGTCGTGATCAAAATAGTGTACCATGATTGATCTATTTTGTT	770	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.728	1.870	1.069	0.901	0.502	0.700
Raw	573.871	965.136	484.716	637.262	126.615	190.408

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17531.1	1070	2e-24	878 - 937	100	60 / 60	plus	ABC13538
JLOC1	JLOC1_12102.3	887	8e-25	694 - 753	100	60 / 60	plus
JLOC1	JLOC1_12102.2	1030	8e-25	837 - 896	100	60 / 60	plus
JLOC1	JLOC1_12102.1	1046	8e-25	853 - 912	100	60 / 60	plus
Harvest21	ABC13538	787	3e-25	702 - 761	100	60 / 60	plus	ABC13538
Harvest35	U35_5478	856	3e-25	771 - 830	100	60 / 60	plus

Contig Sequence (856 bp)

>U35_5478 856 Hv_44K_v2
TTCAACACCTCTTCAATTCTTCCTCTAGCCCAATAACCAACCCGTCACTACGTTCTCCCT
CGAACAGAGTCGCCCCGGTTTGCAGCGCCGCACCACGGGACCTCTCCGGCCGGCGACGAC
AACCGGCCTCCGCCGGCAAACGGCGCACGCAGCGCAGGCAGTTTCAGGATGGGTACTGAA
GACACTAAAGATATGCTGAAGAATGCGGACTGGAAGACAGTGAGTGGTCCCGTTATTACC
GAGTCAAGCCAGCCGGTTGTCAAGAAGCGTCTTCCGAAGAAAATCAGACAAGTCCCTGAG
TGTTACTTTCTGCCTCGACGATCTTTGCCGTCTGCATTGGCAATCTACGGTGCTGTTTGT
GCTGCTGGAGTTGGTACAGGGATGTTGCTTGAGGTTTGGATAAACAAAAAGATCAAAGAG
GATGGCGGCGTTGTCTGGGAGATGGGCAAATGATGTTGATGCACTTTGAGTTGGTAACAA
TCTGGTTTGGCAGACTCACTTGGCTTCACTTATGCTGCTTAAGCTGTATCACGGAAATAA
GCGGAGATTTGTTGTTTCAGACTATCTGTTGAGACTGACAAACGCAGACAATGTTTTCCG
GTGTAATTGACACAACCTTGTCCCTGTGTTTCTAGTTTGGTTGTGCAAGCTGTGTGATGG
TTCAAACTTTATATTCGGCAAGCAAGCTGAAAACACCAGTCATCAACGCATCTGTAGCTG
TCATTTGTAGGCATCATTAGTACTGCACAGGTAAGAACAATCTGAAACTTTGTCTGCAGG
TAGTTGCACGTCGTGATCAAAATAGTGTACCATGATTGATCTATTTTGTTTTGTTTATTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_5478 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15448.1	95	1e-53	protein\|expressed protein
Brachypodium v1_2	Bradi1g47340.2	95	2e-57
Arabidopsis v10	None