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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_29721_PI390587928Hv_44K_v2TTCTGATGTCTTATACATCACGGTGGTGGTGATGTCCTGTAACAAGGGGTATTAAGCCTA834GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6101.6971.1910.6690.3570.388
Raw 639.8671034.219633.962529.499104.291123.925



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_64329.344083e-214290 - 43499758 / 60plus ABC05231 ABC18461
JLOC1JLOC1_42228.243712e-214150 - 42099758 / 60plus
JLOC1JLOC1_42228.142172e-213996 - 40559758 / 60plus
Harvest35U35_54808973e-25835 - 89410060 / 60plus



Contig Sequence (897 bp)

>U35_5480 897 Hv_44K_v2
CTTTGCTTTCCCCTACCTGCTACAGTTCATCCGTGAGTACACAAGCAAGGTAGATGACCT
GGTGAAGGACAGGATTGAATCGCAGAAAGAAGAAAAAGCTAAAGAGCAGGAGGAGAAGGA
CGTCGTTGCTCAACAGAACATGTACGCTCAATTGCTCCCTCTGGCCTTGCCTGCTCCACC
TGGTATGGGTGGTCCACCCCCGATTGGTGGGATGGGTATGCCTCCTATGGGTGGGATGGG
TATGCCTCCGATGGGTGGGATGGGTATGCCTCCGATGGGTCCTGGTCCGATGCCGGCATA
TGGGATGCCTCCGATGGGAAATTACTGAGTTGGCTTTTGAAGAACATAGATGAAGTCGAT
TGTTTCAGTTTTTTTACACACAGGGAGCATGGGGATCCCAAGGTATCTTTTAAGTTGTAG
ATTGATTTGGGCTATTGGTTGTTTCAGTTAATATTCTTTTGGTACCAGGACAATTTTGGC
GAGCAATATCTCTAGCCGAGGTACGAGTTAATTTACTGGTTTCTATATATTGTGATCGGG
TAGGATGAGAATGAGATTAGGTTTCAGCTGAAGAATGAGAGGTGGAAGACTGGTACCATT
TGTATAGCTTGTGTTATAAAAAGTCTGTAGACATTTTGGGTGTACACTCGTCGGTGTTGG
TCCAGCCATGAACATAAACACTCCCTGTATGTTATATGTTCACTTGTGTCCAGAGGTTTG
GTTTTTGTACCTGGAAGAATGCTCTTTGTTGAACGACACGGTGTATTTGTATTTGTATTT
GTATTTGTTAATGGTCAGTAGTTTCCCTGAGCAACCTTTTATTTTTTTGCTCCGTTCTGA
TGTCTTATACATCACGGTGGTGGTGATGTCCTGTAACAAGGGGTATTAAGCCTAAAC



Homology of Contig U35_5480 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None