barSeed - Barley Seed Development Database

Probe CUST_29720_PI390587928

Source Contig U35_5481

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29720_PI390587928	Hv_44K_v2	TTTGGGAAAGTATTTGTACTATTGCCTCTGTTTGAATGAAAGTGTTGTCGTGCTCTCAAA	592	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59703.1	3292	6e-24	3080 - 3138	100	59 / 59	plus	None
JLOC1	JLOC1_38867.1	3221	3e-24	3074 - 3132	100	59 / 59	plus
Harvest35	U35_5481	747	3e-25	593 - 652	100	60 / 60	plus

Contig Sequence (747 bp)

>U35_5481 747 Hv_44K_v2
GCAGAGATATGGGGATTATATGCAAGATGGCATAAAAGCAAGGGCNACCTCATGGCATGC
TCTGAAGCTTTGTTGAAGCAAGTTCGATCCCTCCAGGGTTCAGGATTATGGCATGATCAG
AAGAAGTTCACGAAGTATGCTCAAGCTTCTCTGCAACTTTGCAAGGTCTATATCGAGATT
TCCTCCACGACTGGAAGCAGACGAGAATTATTGTCAGCTGAGATGCATCTTAAAAGCTCC
TTAAAACAGGCAACGGACTTCTCAGGTACGGAGGAGTATAAATCACTTAATGACTGCCTT
GACCAATTAAGGGGCCTGATTGGCGCTGCATAGAGTTACTGATATCTTGGTTGCGAACCA
AGGTCACTTTGTCATATTGCTTATCACAGACCCTTTATAAATGACAAGCATCGTCAAGTC
GCATCATCCGATGGTCTATACTCAAGTTCGGCACGAAGAGTACACCAGACCCTTTATTTA
CTCTTGTTCTGTTATTCATGTTGGTCGTTTGCTGAATGTTTCAGCACACAATCCAGCTCG
TAGCTGTGAGCACTCTGTTAATCAGGTTTATCATGTGTAATCCCAGACTGTATTTGGGAA
AGTATTTGTACTATTGCCTCTGTTTGAATGAAAGTGTTGTCGTGCTCTCAAAAAAAAAAA
AAAAAAGCATATATAACTAAAAAAGTAGGCCTGTAAGGATTCAATTTTTCTGGATTTTTG
ACTTTTTTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g27180.1	919	1e-52	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g28660.1	890	2e-58
Arabidopsis v10	None