barSeed - Barley Seed Development Database

Probe CUST_29719_PI390587928

Source Contig U35_5482

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29719_PI390587928	Hv_44K_v2	TGAACGAATGTTCAATGCTCATCATGGATGAGGCAGACAAGCTGTTAGCTCCTGAGTTTC	971	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364178	2122	2e-24	938 - 997	100	60 / 60	plus	ABC11120
MLOC	MLOC_51815.1	1797	2e-24	552 - 611	100	60 / 60	plus	ABC11120
JLOC1	JLOC1_33128.1	2357	8e-25	851 - 910	100	60 / 60	plus
Harvest21	ABC11334	1103	3e-25	972 - 1031	100	60 / 60	plus
Harvest35	U35_5482	1103	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1103 bp)

>U35_5482 1103 Hv_44K_v2
CAAAAGCGAAACCCACGCCCTCCGAAAGGGGCAAACCGTCGGAACCCTAGATCCCTCGCG
CCTGGTCGCCCCCAGCTCCAAAACCCTAGATCCCGCCATGCACCACCCGAGGGCCCGGTA
CCCGCCCGGCTACGACTACGGCGGCGGCGGCGGCGGTGGCCGCGGCGGTAACGGCGGCGG
CGGTGGAGGTGGTGGCGGCGGGAACCAAAACTACTACAGCGGCCGAAACCCCCACCCCCA
GCAACACGATTACCATCACCAGCAGCAGCAACACGCGCCGAGGAACTCGTTCCCGCAGCA
GCAGCAGCAGCAGCAGCACGCGCAGAGGAACTCGTTCTCGCAGCAACAGCAGCAGCAGCA
GCAGCAACAACAGCATCAGCAGTGGCTGCGGCGGGACCAGGCCGCGGCCCAGTCGTCAGG
AGAGGGAGCGGCGAGGACGGTGGCGCGACTCGACGCGGTGGACACGAGCTCTCAAGATTG
GAAGGCACAGTTGAATATTCCAGCTCCAGATACTCGTTTTAGGACAGAGGATGTTACTGC
AACGAAAGGCAATGAGTTTGAAGATTATTTTTTGAAACGTGAGCTACTTATGGGAATATA
TGAGAAGGGATTTGAAAGACCATCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTAAC
TGGAAGTGATATTCTTGCAAGAGCGAAAAACGGCACTGGGAAGACCGCTGCATTTTGCAT
TCCAGCGCTTGAAAAGATTGACCCAGAGAAAAATGCCATACAAGTTGTTATATTGGTACC
TACAAGGGAACTAGCTCTGCAGACTTCACAAGTTTGCAAAGAGCTTGGGAAATACCTGAA
TATTGAAGTTATGGTTAGTACTGGAGGAACCAGCTTGAAGGATGACATTATGCGTTTGTA
CCAACCTGTTCATTTACTCGCCGGGACACCTGGCCGTATACTGGATCTTACCAAGAAGGG
CATTTGTATGCTGAACGAATGTTCAATGCTCATCATGGATGAGGCAGACAAGCTGTTAGC
TCCTGAGTTTCAGCCTTCTGTGGAGCAACTCATTCGTTACCTTCCAGCTAGTCGGCAACT
ATTGCTGTTTTCTGCAACCTTTC

Homology of Contig U35_5482 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35990.1	471	1e-142	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi3g30250.2	524	4e-156
Arabidopsis v10	AT4G00660.2	505	6e-125	\| Symbols: RH8, ATRH8 \| RNAhelicase-like 8 \| chr4:274638-277438 FORWARD LENGTH=505