barSeed - Barley Seed Development Database

Probe CUST_29717_PI390587928

Source Contig U35_5484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29717_PI390587928	Hv_44K_v2	ATGATCATTTTCGATGCGGATCTTCGATGCGATGGATAGGTTCCTCGAAGGCAATTTCGA	647	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4452.2	4539	2e-24	658 - 717	100	60 / 60	minus	ABC11505
Harvest21	ABC11504	888	3e-25	648 - 707	100	60 / 60	plus
Harvest35	U35_5484	888	3e-25	648 - 707	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_5484 888 Hv_44K_v2
CAGCCGCGGAGGGGGGGTGCGTCGGCCGTCGGTGGGCGTCGGCGGGCGGGCTCGATGGGA
CGCGGCGGCGGCGACGGACGGCACGCCTCCACCCCGGCGGCCGGGACAGGGAGAAAAGGG
GCCTGAAAAGCGAACCCGATTCCCTCGACCCCGCCCGCTTTTGTTCCCGTTCCGTTCCGT
GTGCAGCGATAACATTCCTCTCGCTCTCCGTTCCTGCTTTTTTTTGCTTATTCCTTCCGC
CTGCCTCCCCTCCTTTCCCTGGAAGAGGAGGGGGAAGGGGGGCAAGAGGGCCGGCCGACC
GCCGCCGCCGTCGTCGCCGATGTCGGACCGGGAGCTCCCGCCGCTGCGATCCATCCGAAT
CACAGGGGACGGGAGATGCTTGTTCCGGTCGGTCGCTTACGGCGCCTGCATAAGGAGAGG
CAAGCAGTCGCCGAGCGACAGCGTCCAGAAGGAACTCGCCGACGAGCTCCGAGCAAAGGT
TGCAGATGAGTTCATCAGGCGAAGAGGAGATACCGAATGGTGAAGTCTTCTTTCCTCCTC
TTACCATTTTTTTTTTACATCTGAGCCGTTTGTTTCCTGCAAAAAACATATGCTTAAATA
AGAGAATTAAACATGAACTTCTTTGTTCCTGCAAAAACAAAAGTAACATGATCATTTTCG
ATGCGGATCTTCGATGCGATGGATAGGTTCCTCGAAGGCAATTTCGAGAGCTATGTGCGC
AAGATGAGGAAGCCTCATGCCTGGGGAGGAGAACCTGAACTGCTCATGTGCTCACATGTT
CTTGGGATGCCCATCACCGTCCACATGTACACCAAGGGCGCTGACAGCCCCAGGATCATA
GCAGAGTATGGCCAGGAGTACGGGAAGGACAACCCGGTCCGAGTTCTT

Homology of Contig U35_5484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None