barSeed - Barley Seed Development Database

Probe CUST_29716_PI390587928

Source Contig U35_5485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29716_PI390587928	Hv_44K_v2	GGGTTCGCTGCTCTGTCGTTCGATCTTCTTCGGGGCTGATGTATAAATAAGCTTCGCGTG	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4452.1	1193	2e-24	229 - 288	100	60 / 60	minus	ABC11505
MLOC	MLOC_4452.3	4419	2e-24	208 - 267	100	60 / 60	minus	ABC11505
MLOC	MLOC_4452.2	4539	2e-24	209 - 268	100	60 / 60	minus	ABC11505
JLOC1	JLOC1_2771.2	4379	8e-25	4078 - 4137	100	60 / 60	plus
JLOC1	JLOC1_2771.1	4399	8e-25	4098 - 4157	100	60 / 60	plus
Harvest21	ABC11505	627	3e-25	539 - 598	100	60 / 60	plus	ABC11505
Harvest35	U35_5485	627	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_5485 627 Hv_44K_v2
GCACGAGGCGGCGCCTGCATAAGGAGAGGCAAGCAGTCGCCGAGCGACAGCGTCCAGAAG
GAACTCGCCGACGAGCTCCGAGCAAAGGTTGCAGATGAGTTCATCAGGCGAAGAGGAGAT
ACCGAATGGTTCCTCGAAGGCAATTTCGAGAGCTATGTGCGCAAGATGAGGAAGCCTCAT
GCCTGGGGAGGAGAACCTGAACTGCTCATGTGCTCACATGTTCTTGGGATGCCCATCACC
GTCCACATGTACACCAAGGGCGCTGACAGCCCCAGGATCATAGCAGAGTATGGCCAGGAG
TACGGGAAGGACAACCCGGTCCGAGTTCTTTACGACGGCTACGGGCACTACGACGCCCTG
CAGCCATCTATTGTAAGGACACAATCAAGACTGAGAGGAGCGTAGCTACCCGGAGACCGC
GTTATGTAAGCTTCTTCTACTACTTCTCTAGCGCAGCCGCATAAATTCCGACATCTTCCA
CAACTCGATTTCGTTCGAGTTGGCAGACCCCAGTATAGCACATATGGAAGTTCAGCCCGG
GTTCGCTGCTCTGTCGTTCGATCTTCTTCGGGGCTGATGTATAAATAAGCTTCGCGTGAA
AAAAAAAAAAANAAAAAAAAAAAAAAA

Homology of Contig U35_5485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67490.2	354	4e-82	protein\|OTU-like cysteine protease family protein, putative, expressed
Brachypodium v1_2	Bradi2g57807.1	158	2e-81
Arabidopsis v10	AT3G57810.2	317	8e-51	Cysteine proteinases superfamily protein \| chr3:21416336-21417809 FORWARD LENGTH=317