barSeed - Barley Seed Development Database

Probe CUST_29715_PI390587928

Source Contig U35_5486

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29715_PI390587928	Hv_44K_v2	CAGTGTTGTGTACAGTTGTAGGCTCATGAATTTAACGCAAAGTTGTTGTCCGACAAAAAA	1416	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12117.3	1926	9e-22	1355 - 1409	100	55 / 55	minus	ABC09756 ABC12625
MLOC	MLOC_12117.1	2515	9e-22	1701 - 1755	100	55 / 55	minus	ABC05016 ABC05017 ABC09756 ABC12625
JLOC1	JLOC1_8112.1	2065	5e-22	633 - 687	100	55 / 55	plus
JLOC1	JLOC1_8111.1	2515	5e-22	1716 - 1770	100	55 / 55	minus
Harvest35	U35_5486	1487	3e-25	1417 - 1476	100	60 / 60	plus

Contig Sequence (1487 bp)

>U35_5486 1487 Hv_44K_v2
TAGTGACCCGGGNAATCAGACAAGGTCATGGTCCATTTGGGTGTAAGCAAATCGAGACGT
GGGGACGAGAGCCACTCAGGGTCATTTCGTTGCATGGACAAGGATGCAGGCTTTCAATCA
GCTGAAGAAGGAGGGTCGGGAACTTTTCGGCAAGGTTCAACTCATGGAATAACTGCCCCT
TCACCTTTGGTTGGCTTGCCAGAGTTCTCCTACCTTGGCTGGGGTCATTGGTTTACTTTG
AGGGATTTGGAACTTGCTACTAACCGTTTTTCCAAGGATAACATTATTGGTGAGGGTGGA
TATGGTGTAGTTTATCGCGGCGAGATCGTCAATGGCACTCCTGTTGCTGTCAAAAAGCTT
CTTAATAACCTAGGGCAAGCTGAGAAGGAATTCAGAGTAGAAGTTGAGGCTATTGGTCAT
GTCCGCCACAAGAACTTAGTCCGTCTTCTTGGTTACTGTGTGGAGGGTACTCAGAGGATA
CTTGTCTATGAATATGTGAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGT
CACCGGGGCTCCCTTACATGGGAGGCCCGCATAAAGATTCTTCTAGGGACAGCTAAAGCG
CTTGCTTACTTGCATGAGGCAATTGAACCAAAAGTCGTGCACCGTGATATCAAATCGAGC
AATATTTTGATCGATGATGATTTTGACGCTAAAGTATCAGATTTTGGTTTAGCTAAGCTT
CTTGGTGCTGGCAAGAGTCATGTAACTACCCGGGTTATGGGAACCTTTGGCTATGTGGCA
CCAGAATATGCAAACACTGGACTGTTGAATGAGAAAAGTGACATTTACAGCTTTGGAGTT
GTTATTCTAGAGGCAATTACAGGGAGGGATCCTGTTGACTATGGTCGCCCGACAAAGGAG
GTAAATTTGGTTGACTGGTTAAAAATGATGGTTGCTAGCAGGCGTTCAGAGGAGGTGGTA
GATCCCACCATAGAGACACAGCCTTCGACAAGAGTTCTCAAGCGTGCACTTCTAACAGCT
TTGAGGTGTGTGGATCCAGATTCAGAAAAGAGACCGAAGATGGGTCAAGTTGTGCGGATG
CTGGAGTCAGATGACCCAATTCCTCGTGTGGACAGAGGATCTAGGCATAACCGCGGGGGT
AGCACTGGAATGGACTCCCAGCGGGACAACTCCGACACGGACAAGAGTGACAACCCAGAT
TCCAAGCCGAGCAGGAGCAGAACATCATCTTCCAAATGAGCACACACACATTGACATTTC
TTGAACAAATTAGTAATGATGGAAGCTTTGACTACGAAAGAGCTGATGAAAAACATGTAT
TTTGTGTTGTTTCTGGATGGTTGTGACAGTTTGTGTATGATTTATTTGTAGAGGCTGGTT
TTCCACTTATCAAAGTGTGCTGCTGTAAGTTGTTAACAGTGTTGTGTACAGTTGTAGGCT
CATGAATTTAACGCAAAGTTGTTGTCCGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_5486 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g21960.1	517	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g12120.2	516
Arabidopsis v10	AT1G56720.1	492	Protein kinase superfamily protein \| chr1:21263630-21265559 REVERSE LENGTH=492