barSeed - Barley Seed Development Database

Probe CUST_29712_PI390587928

Source Contig U35_5489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29712_PI390587928	Hv_44K_v2	GAATAAAAACCCTTTCTCTCTTGTTCTTCTGCTTTGCTCCCCTTTGGTTTGCTGATTCCA	1124	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.151	2.607	1.291	0.726	0.253	0.380
Raw	437.672	564.348	247.341	218.917	26.492	43.887

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC11380	1197	3e-25	1124 - 1183	100	60 / 60	plus	ABC11380
Harvest35	U35_5489	1198	3e-25	1125 - 1184	100	60 / 60	plus

Contig Sequence (1198 bp)

>U35_5489 1198 Hv_44K_v2
GACAACGCTGGCTTCGACAAGGAGAAGCAGATGATCCAGGGGGAGAGCCTCGATGACGAT
GAGGAGGAGTTCAATGAAGTCAAGGAGAAGGATGATATGCTCATCGAGAAACTAAATGCT
ATTGAGAAGAAGATCGAGGAGAAGTTGGCGGATCTGGATCATACGTTTGGTAAGAAGGGT
AGGGTTTTGGAAGAGGAAATAAAGGATCTGGTGGAGGAGAGGAACTCCCTGACGGACAAA
AAGAGGAGGCCTATGTACAGAAAAGGTTTTGATGTGAAGGTCATTGACGTTAATCGGACA
TGCAAAGTTACAAAGGGAGGCCAAATAGCAAAATACACAGCATTGTTGGCAACTGGAAAC
TACCATGGTGTTGTAGGTTTTGCAAAAGCTAAAGGTCCAACAGCAAAGATTGCAATACAG
AGGGCCTATGAGAAATGCTTCCAGAACCTACATTACATGGAGCGGTATGAGGAACACACA
ATTGCTCATGCGATTCAGGCCAAATACGAGAAAACAAAGATCTACCTCTGGCCTGGACCA
ATGAGGAGTGGGATGTGTGCCGCCGGCAGGACTGTCGAAACTGTGATGTATCTAGCCGGG
TTTAGCAACGTCAAGTCAAAGATTATTGGATCGAGGAGCCCGCTCAACGTTATCAAGGCT
CTCTTCATAGCACTAAATGCTATTGAAACGCCCAAGGATGTGGAGCAGAAGTTTGGACGG
ACTGTTGTGGAGTCGTACTTGTTGTAGGGAGGTAGTCATCTGTTTGTGTTTGTGGAGATC
GCGTCGGCCCTGCTGGAGTGGCAAGGGAAGACCGAAAAGAGGAGCCGGTGGCAGATCCGT
CCGTGAGACCTCTGTTTGCATCCGTAATTCCAACTAGTATTTGTTTGTCCTGCGACCGTT
CCCCTGTTAACCGGGTACTGTAATATTTCAAATCGATCAATGCATACTGTAACCAGATAG
GAGGTGATGATATGTACTTGGCAAATAGAATGAAGGCCACGTCTGGTCGCAATTTTTTTA
TATTTTTTTTTGGTTTTGTCAGCAGATATTCTGCGATTCTGTCGAGGCGGCCTGCCTGGT
TGCTTGGGAGGTTAGATGTTAGATGGATCCTAAATTGGTAGAAAGAATAAAAACCCTTTC
TCTCTTGTTCTTCTGCTTTGCTCCCCTTTGGTTTGCTGATTCCATCAAAAAAAAAAAA

Homology of Contig U35_5489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01230.2	502	5e-159	protein\|ribosomal protein, putative, expressed
Brachypodium v1_2	Bradi3g00387.1	517	3e-165
Arabidopsis v10	AT1G64880.1	515	3e-111	Ribosomal protein S5 family protein \| chr1:24105713-24108780 FORWARD LENGTH=515