- Probe CUST_2970_PI390587928
- Source Contig U35_11331
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2970_PI390587928 | Hv_44K_v2 | TTTGGAGGAAACCACGCCGCTTCCGGCATTGCCACCATCGGTGCTCCATCATTTGGGTAA | 306 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK370679 | 2463 | 7e-23 | 322 - 381 | 98 | 59 / 60 | plus | ABC17168 ABC45971 |
MLOC | MLOC_22751.2 | 863 | 7e-23 | 394 - 453 | 98 | 59 / 60 | plus | None |
MLOC | MLOC_22751.1 | 1347 | 7e-23 | 399 - 458 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_15762.1 | 1347 | 4e-23 | 399 - 458 | 98 | 59 / 60 | plus | |
Harvest21 | ABC44022 | 502 | 1e-23 | 267 - 326 | 98 | 59 / 60 | plus | |
Harvest21 | ABC30199 | 498 | 2e-21 | 310 - 368 | 97 | 57 / 59 | plus | |
Harvest35 | U35_11331 | 542 | 3e-25 | 307 - 366 | 100 | 60 / 60 | plus |
Contig Sequence (542 bp)
>U35_11331 542 Hv_44K_v2 CCGTGTCTCCCAATCCAACATCCATCAAACGAGCGTGGCTCCTGCTGATTCCGCTCGATC CATCACAGAGCCAGCCCCCAGCTCCGTGGACAAGTCCAGTGACTGCAGGCAACCGAGGCC CAAGCCTTTCTCTCGTCCCCGAGCTCCCAAAGCTCTGCGCCGAGCTAGCGGCCGTGCCCG ATCCTGCTGCCACCTCCAGCTGGCGCCGACGACCAAGCCAGGAGTAGCAGGCCCCTGCGC CCCTTTCCCTCCTCTCGTTTCCTCTCCTCTTGAGTCCCATCGTTCCCAGTTCTCTCTTTT CCTCTGTTTGGAGGAAACCACGCCGCTTCCGGCATTGCCACCATCGGTGCTCCATCATTT GGGTAAGCGGGAGCACGCCGCCTTTGGGAATGGATTCCTCTCCACCGGATCTAGCGTCCC CACTTCTAGATCCATCGTCCTCGGGGCGTCCCCATGCCCAGCATGCCCTCACCGTCGCCT CCTTCCACTGCTACCGGTGTCGTGTACGCGTTGACCCGCCTCCTTCAGCGTGTGCACGGA TG
Homology of Contig U35_11331 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |