barSeed - Barley Seed Development Database

Probe CUST_29707_PI390587928

Source Contig U35_5494

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29707_PI390587928	Hv_44K_v2	GACAATTTGTTGCGGAACTCATCTTGTGTTCTCACTCGACTTTAAATCTCTAATATGTTG	1120	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.986	1.922	0.706	0.557	1.265	1.126
Raw	4.100	15.649	3.860	3.984	3.765	3.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36554.1	1175	6e-24	1 - 59	100	59 / 59	minus	ABC13817
JLOC1	JLOC1_23550.1	1192	8e-25	1126 - 1185	100	60 / 60	plus
Harvest35	U35_5494	1183	3e-25	1121 - 1180	100	60 / 60	plus

Contig Sequence (1183 bp)

>U35_5494 1183 Hv_44K_v2
GGATCCCCCGGGCTGCAGGCATCGTGTCCGAATTTCTGGCACGAGGCAGAGAGGGAGCGC
AAAGGGACGGCGGAGGAGGCAAGCTTAGCTTCCCGGGGCGGAGGCACCGAGAGACTAGGA
GAGGACGGGAGGGAGGAGGCGCGTGGGAGCCATGCTTCTCCCCTCTTCGTCTTCCTCCTA
CGATCCCAAAGGTGACTCCTTTGGGAAATCGGTTGACGATTCTATGAGGTCAACTTTGAC
TTTTGGGGAAAAGCATTCTGTATTTACAAGTCAAAACACTGACTATGGCCACCCAATGGC
TTGCATTTCATACCCATTCAGTGATTCTGGTTCTGGAGTTTGGGCAGCCTATGGGTCACA
GGCCATGTTCCATCCCCTCACCGCGGGAGGAGGGTCATCTGCAACAGCAAGGGTTCCCCT
GCCTCTCGAATTAGCGGCGGATGAGCCCATATTTGTCAATCCCAAACAATACAATGGGAT
TCTCCGGCGAAGGCAGCTGCGCGCTAAGTTAGAGGCCCAGAACAAACTCACCAAAAACAG
AAAGCCCTACCTCCATGAGTCTCGTCATCTTCACGCAATGAAGCGAGCAAGAGGCTCCGG
TGGACGTTTCCTCAATTCCAAACAGCTCCAACAGCAGCAGCAGTCTGGCAGTGCCTGCAC
GAAGGCCATTGCGGATGGCGCAAATTCCTTGGGCTCAACCTATCTACGGCTGGGTAGTGG
CGCAGCCGGAGATCGACCCACCTCGGCATCCAAGACGATATCCTCGCAGGAGAACAACAA
GAGAGTGGCCGCACCGGCTCCCGCCTTCACCATGATTCCTGCGGCGCAGAAAGACGACGA
CTTCTTCCACCATCACGGTCACCATCTCAGCTTCTCTGGCCACTTTGGCCAGTCAAGCGA
GCGGTATACGTAATAACGGGTCTTTGGTGACCCGGTGTGGTCTGATGATCAGGCAACTCA
TCCTTGGCTTTATTTCTGGCGTGTTAGGACTTCAGAGATAGTGTACTACTGTTGTACTGC
TGTTGTACTGCTTTGCAGCCCATAATTCTGGGCTTTATGTTCGGTATGCAAATGTTGGTG
TAATGGTGTGTGTTGGAACAAAAGTTTTATGTGTTTACATGACAATTTGTTGCGGAACTC
ATCTTGTGTTCTCACTCGACTTTAAATCTCTAATATGTTGTGC

Homology of Contig U35_5494 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g53620.1	271	3e-90	protein\|nuclear transcription factor Y subunit, putative, expressed
Brachypodium v1_2	Bradi3g57320.1	257	2e-106
Arabidopsis v10	None