barSeed - Barley Seed Development Database

Probe CUST_296_PI390587928

Source Contig U35_20053

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_296_PI390587928	Hv_44K_v2	TGACATACAAAGCATCAGTTCTGGTGGTTTTCCACGACATTTGCTAAGATTTTCAAAAAA	921	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.328	2.553	1.012	0.585	1.377	0.290
Raw	61.482	104.208	36.639	31.648	23.679	5.829

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70619.1	1068	3e-22	890 - 945	100	56 / 56	plus	ABC12975
JLOC1	JLOC1_46874.1	922	1e-22	841 - 896	100	56 / 56	plus
Harvest21	ABC12975	952	3e-25	12 - 71	100	60 / 60	minus	ABC12975
Harvest35	U35_20053	992	3e-25	922 - 981	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_20053 992 Hv_44K_v2
CCGTGGATGGGCTCCTCTTGGCAACAGCCAGTGTTAGGGGTACTTTGATCAGAATATTCA
ACACGATGGACGGCGCTTGTCTGCAGGAGGTGCGCAGAGGAGTAGACAAAGCTGAGATAT
ATAGCATTGCACTATCACCAAACCTGCAGTGGTTGGCAGTGTCTAGTGACAAAGGCACAA
TGCATATTTTCAGCTTGAGAGTGAGACCTAGAGGGAAAGATGCAAGTAACGGGCAATCTG
CAATTGCTGGTCGACAAATGGATCGTAGTTACTCATCCAGTTCTGTTGGATCCAATGCGA
GCTCATCCTTGTCTTTCATGAAAGGGATTCTCCCCAAATATTTCAGTTCAGAGTGGTCAT
TTGCTCAGTTCCGTTTACCCGAAGTCACACGCTATATTACAGCATTTGGAGATCAAACCA
CTGTGATGATGATTGGTCTGGATGGCAGTTTCTACAGGTGCAGCTTTGACCCTGTAAATG
GCGGGAAGATGGTGCTGGATGAATTCATCCGGTTTATGAAACCCAGCATGTCCCGTTCCA
GGAGTCCAAGCGCCTGAGCAGCTGAGCTTCATGGCAACGGCGATCATGTCATTCTCTAAC
TACATGTACATATAAGATTTCACCAAGTCCGCCATGTGTATATAGTCGCGGGTTAAGGAG
AAGTGGGCATTCAGCGCCATCTTTTCCCTTTAAGGCTGGTTCCATGTATGTTTTTGTTGA
CAAATCTTTGGCGTCGCGTTGCCGACGATGATCAAATCCTTTGGTTTTCGGAAACCATGG
TCCAGTTCGTGCTACACATCAGCCCAGCAAGGTTGCAACTTTGTCACGCTCTTCAAGATG
ATGGTCAGACTGTTGATTTGCCTCGGATTTGTAATCCCTTATCTTTTGAACCTCGGCATT
TGGTTTCTCTTGTGCTGACAATGACATACAAAGCATCAGTTCTGGTGGTTTTCCACGACA
TTTGCTAAGATTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g07400.1	418	6e-75	protein\|WD40-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g04210.1	419	3e-72
Arabidopsis v10	AT3G56440.1	391	3e-66	\| Symbols: ATATG18D, ATG18D \| homolog of yeast autophagy 18 (ATG18) D \| chr3:20926874-20928797 FORWARD LENGTH=391