barSeed - Barley Seed Development Database

Probe CUST_29694_PI390587928

Source Contig U35_10511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29694_PI390587928	Hv_44K_v2	TGAATGAATTACGCTCACAAGAAAAGGATGCTGACTCAAAGCACAAGACTTTGGAAAAAA	428	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.618	1.924	1.284	0.679	0.264	0.227
Raw	4945.367	9217.137	5410.623	4375.280	609.523	569.206

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70120.2	1203	2e-24	1142 - 1201	100	60 / 60	plus	ABC24344
MLOC	MLOC_70120.1	1373	2e-24	959 - 1018	100	60 / 60	plus	ABC04846 ABC24344
JLOC1	JLOC1_46519.1	1362	8e-25	948 - 1007	100	60 / 60	plus
Harvest21	ABC24344	499	3e-25	429 - 488	100	60 / 60	plus	ABC24344
Harvest35	U35_10511	499	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_10511 499 Hv_44K_v2
TGATGCTCAATCTCTCGAGGCTAATTTGGAGGAAAAATCTTTGGAGATCGAGGGGAAGCT
TCATGCCGCAGATGCGAAGCTTGCGGAGGCAAACCGTAAGAAGTCACAAGCTGACAGAGA
TTTAGAGGAGGCAGAAGCTCGGCAACGTAGGTTGGAGAAGGAGAAGCTATATTTTGAGAC
CGAGAGGAAGGCCCGAGAGAAGCAACTCAAGGAGCAGGAGGAATCTCTGCAGGACTGGGA
GAAGAAGCTTAAAGAAAGTCAGAACAGACTCGTTGATTTGCAGAGATCTGTAAATGACAG
AGAGGAGAGAGCAAATGAGAATGACAAACTTTGTAAGATAAAACAGGAAGAATTGGAGGA
GGCAAAAAAGACAGTGGAGTCAACTAAAATCATTTTGAAAACAAAGGAGGAGGATATTGC
CAAAAGGCTGAATGAATTACGCTCACAAGAAAAGGATGCTGACTCAAAGCACAAGACTTT
GGAAAAAAAAAAAAAAAAA

Homology of Contig U35_10511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g48010.1	1156	4e-52	protein\|nuclear matrix constituent protein 1-like, putative, expressed
Brachypodium v1_2	Bradi3g53047.1	1158	2e-58
Arabidopsis v10	None