barSeed - Barley Seed Development Database

Probe CUST_29670_PI390587928

Source Contig U35_22507

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29670_PI390587928	Hv_44K_v2	GTATATCCAGTCTGGTTTAAGACAAGAGCATTGGCTTTGAAAATCATTTTCCAAGCAATA	579	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355479	1771	2e-24	1692 - 1751	100	60 / 60	plus	ABC16906
MLOC	MLOC_1949.1	507	2e-24	45 - 104	100	60 / 60	minus	ABC16906
JLOC1	JLOC1_1184.1	463	8e-25	143 - 202	100	60 / 60	minus
Harvest21	ABC16906	690	3e-25	52 - 111	100	60 / 60	minus	ABC16906
Harvest35	U35_22507	690	3e-25	580 - 639	100	60 / 60	plus

Contig Sequence (690 bp)

>U35_22507 690 Hv_44K_v2
ATGAGACGAATTGTTGACTCCTTGATGCATCAGTCCATGGGGGAGGGAGCTTTAGAGCGT
GCACTAACTTCTTCTTTCCTTGTTTCCGCCGATATGGCTCATGCCCTGCACCCAAACTAT
CCAGACAAGCATGAAGAGTACCACAGACCAGAACTACAAAAAGGACTTGTTATCAAGCAT
AATGCCAACCAACGTTATGCCACAAGTGCTGTAACAGCTTTTCTCTTCAAAGAAATAGCT
CGAATTCATAACCTTCCCGTCCAGGAATTTGTTGTAAGGAATGATATGGGTTGTGGCTCA
ACTATCGGTCCCATACTTGCTTCCGGTGTTGGCATACGGACTGTTGATTGTGGTATTCCT
CAGCTTTCCATGCACAGCGTTCGGGAAATGTGTGGCAAAGAAGACATTGACACCACATAC
AAGCACTTCAAAGCTTTCTTCGAGATGTTCTCGGACATTGACCAGAAACTGAATGTAGAC
TTTTAGCTCTTGACATCTAAATGTGCATTCTCTTAATAATGTATGGATATTCAGCTTGGC
CTCTGAATAATGTCTTTGATCATAGTATCAGTTTTTGTTGTATATCCAGTCTGGTTTAAG
ACAAGAGCATTGGCTTTGAAAATCATTTTCCAAGCAATAATACAAATTAACGNCAACTCC
CTTGAGATTGTGTTTATAACTTCAATTTCT

Homology of Contig U35_22507 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g73680.1	526	1e-105	protein\|aspartyl aminopeptidase, putative, expressed
Brachypodium v1_2	Bradi2g61860.1	521	1e-107
Arabidopsis v10	AT5G04710.1	526	2e-79	Zn-dependent exopeptidases superfamily protein \| chr5:1357273-1360128 REVERSE LENGTH=526