barSeed - Barley Seed Development Database

Probe CUST_29666_PI390587928

Source Contig U35_10532

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_29666_PI390587928	Hv_44K_v2	TACAGGACCAGGAAGGAGAGGGAGAAGGCCGACTTCAGGAACCATGTCATCCAGTGGTTC	423	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376258	1945	2e-24	394 - 453	100	60 / 60	plus	ABC08128 ABC17639
MLOC	MLOC_34872.1	1594	2e-24	678 - 737	100	60 / 60	plus	ABC08128
JLOC1	JLOC1_22532.1	1465	8e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_10532	525	3e-25	424 - 483	100	60 / 60	plus

Contig Sequence (525 bp)

>U35_10532 525 Hv_44K_v2
ATACAGACATCGAGGGCCTAACTGCACGCTCGATCAACAAAGCACAACTCGAGTCTACCT
CAAGAACTAGGAGGAGACACTACACCCAGTTCGAAGAGCAGTCGAGTGACCATGGCCGCA
GCAGCCAACGATGGCCTCGCCGACGAGAAGGCGCCGGGGACGATCGGCGTAGGCCGGTAC
GAGGAGATGGAGCAAGACGGCGCCCCGAGCACCGCAAAGTCGCGGCTCTCCGGCCTCCTG
TGGCACGGCGGCTCCGCCTACGACGCCTGGTTCAGCTGCGCTTCCAACCAGGTGGCCCAG
GTGCTCCTGACCTTGCCCTACTCCTTCTCGCAACTGGGGATGGTGAGCGGCATACTGTTC
CAGCTCTTCTACGGCCTCATGGGGAGCTGGACCGCCTACCTCATCAGCATCCTCTACGTG
GAGTACAGGACCAGGAAGGAGAGGGAGAAGGCCGACTTCAGGAACCATGTCATCCAGTGG
TTCGAGGTGCTGGACGGGCTGCTGGGGAGGCACTGGAGGAACGTC

Homology of Contig U35_10532 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14080.1	525	5e-81	protein\|transmembrane amino acid transporter protein, putative, expressed
Brachypodium v1_2	Bradi1g68350.1	526	2e-85
Arabidopsis v10	AT2G21050.1	483	3e-70	\| Symbols: LAX2 \| like AUXIN RESISTANT 2 \| chr2:9034289-9036439 FORWARD LENGTH=483